Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E24
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical pr...    41   1e-04
AL132949-2|CAB61069.1|  286|Caenorhabditis elegans Hypothetical ...    36   0.004
Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical pr...    33   0.021
AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain po...    33   0.021
Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical pr...    32   0.048
U97189-2|AAC48165.2|  336|Caenorhabditis elegans Serpentine rece...    29   0.34 
Z81058-5|CAB02921.1|  274|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    27   2.4  
U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical p...    27   2.4  
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical...    26   4.2  
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U29381-9|AAA68749.2|  503|Caenorhabditis elegans Prion-like-(q/n...    25   5.5  
U29381-4|AAM98023.1|  511|Caenorhabditis elegans Prion-like-(q/n...    25   5.5  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    25   5.5  
AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical...    25   7.3  
Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U41109-10|AAB37042.2|  169|Caenorhabditis elegans Hypothetical p...    25   9.7  

>Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical
           protein C40H1.4 protein.
          Length = 291

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +3

Query: 9   VLRKKNEHVSTLHVIHHG-IMPMSVWFGLKFAPGGHSTFFALLNTFVHIVIYFYYMVAAM 185
           +LRK+   +  LH  HH  ++  +V  G +    G   F+ L+N F H ++Y YY V+AM
Sbjct: 152 ILRKRP--LIFLHYYHHAAVLIYTVHSGAEHTAAGR--FYILMNYFAHSLMYTYYTVSAM 207

Query: 186 GPKYQKYI 209
           G +  K++
Sbjct: 208 GYRLPKWV 215


>AL132949-2|CAB61069.1|  286|Caenorhabditis elegans Hypothetical
           protein Y53F4B.2 protein.
          Length = 286

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 9   VLRKKNEHVSTLHVIHHGIMPMSVWFGL--KFAPGGHSTFFALLNTFVHIVIYFYYMVAA 182
           VLRK+   V  LH  HH ++ +  W       APG    +F  +N  VH ++Y YY + +
Sbjct: 149 VLRKRP--VIFLHWYHHAVVLILSWHAAIELTAPG---RWFIFMNYLVHSIMYTYYAITS 203

Query: 183 MGPKYQKYI 209
           +G +  K +
Sbjct: 204 IGYRLPKIV 212


>Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical
           protein F56H11.4 protein.
          Length = 288

 Score = 33.5 bits (73), Expect = 0.021
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 9   VLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFVHIVIYFYYMVAAM 185
           VLRK+   +  LH  HH +  +  W+     P G + +   LN  VH  +Y YY + +M
Sbjct: 145 VLRKRP--LMFLHWYHHILTMIYAWYSHPLTP-GFNRYGIYLNFVVHAFMYSYYFLRSM 200


>AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain
           polyunsaturated fattyacid elongation enzyme protein.
          Length = 288

 Score = 33.5 bits (73), Expect = 0.021
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 9   VLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFVHIVIYFYYMVAAM 185
           VLRK+   +  LH  HH +  +  W+     P G + +   LN  VH  +Y YY + +M
Sbjct: 145 VLRKRP--LMFLHWYHHILTMIYAWYSHPLTP-GFNRYGIYLNFVVHAFMYSYYFLRSM 200


>Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical
           protein F56H11.3 protein.
          Length = 309

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 9   VLRKKNEHVSTLHVIHHGIMPMSVWFGLKF-APGGHSTFFALLNTFVHIVIYFYYMVAAM 185
           VLRKK   +  LH  HH  M   V+F   +  P   S    ++N FVH  +Y YY   +M
Sbjct: 167 VLRKKP--LIFLHWYHH--MATFVFFCSNYPTPSSQSRVGVIVNLFVHAFMYPYYFTRSM 222

Query: 186 GPK 194
             K
Sbjct: 223 NIK 225


>U97189-2|AAC48165.2|  336|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 15 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 111 HSTFFALLNTFVHIVIYFYYMVAAMGPKY 197
           HST FA+   F H++++ +Y++  M  +Y
Sbjct: 231 HSTKFAVFVVFCHVILFGFYVIGIMILRY 259


>Z81058-5|CAB02921.1|  274|Caenorhabditis elegans Hypothetical
           protein F11E6.5 protein.
          Length = 274

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 9   VLRKKNEHVSTLHVIHHGIMPMSVWFGLKFAPGGHSTFFAL-LNTFVHIVIYFYYMVAAM 185
           VLRKK   V  +H  HH +    V+  + ++       ++L LN  VH V+YFY+ V A+
Sbjct: 135 VLRKKP--VIFMHWYHHALT--FVYAVVTYSEHQAWARWSLALNLAVHTVMYFYFAVRAL 190


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 57  HGIMPMSVWFGLKFAPGGHSTFFALLNTFVHIV 155
           HG + M  WFGLK    G    + L    V I+
Sbjct: 312 HGNISMPEWFGLKKEVEGTEPIYMLFGVIVSII 344


>U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical
           protein C07G1.7 protein.
          Length = 205

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 5   EGAT*KERACVNASCHPSRHNANVRLVRTQIRTRWPQ 115
           EG +   RACVN +    + N N+R +R   RT   Q
Sbjct: 163 EGQSLWARACVNMAASTHQMNENLRKIRQLERTETDQ 199


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 66  MPMSVWFGLKFAPGGHSTFF 125
           MP S+W  L FA  G STF+
Sbjct: 1   MPRSLWILLVFAISGSSTFY 20


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 179 GYHIIEIDYNVNKCI*QREEC 117
           GY  + +D NV KC+  R+EC
Sbjct: 894 GYKYVLLDSNVGKCV-DRDEC 913


>AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical
           protein Y56A3A.31 protein.
          Length = 413

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 20  KERACVNASCHPSRHNANVRLVRTQIRTRWPQHILRVVKYICS 148
           K RACV AS   +       + +   R   P+H   V+  +CS
Sbjct: 339 KRRACVLASAIGASTRPEAEIQKELQRLEVPEHFQPVIDLLCS 381


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
            R09H10.5 protein.
          Length = 1603

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 34   CQRFMSSITA*CQCPSGSDSNSHQVATAHS 123
            CQ   S +   CQCPS  D +S Q  T ++
Sbjct: 1105 CQNGGSVVDFKCQCPSIYDGDSCQYTTCNT 1134


>U29381-9|AAA68749.2|  503|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
           isoform a protein.
          Length = 503

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 186 PWRLPYNRNRLQCEQ 142
           PW +PYN N+ Q  Q
Sbjct: 357 PWYMPYNENQAQVNQ 371


>U29381-4|AAM98023.1|  511|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
           isoform b protein.
          Length = 511

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 186 PWRLPYNRNRLQCEQ 142
           PW +PYN N+ Q  Q
Sbjct: 365 PWYMPYNENQAQVNQ 379


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 7   GCYVKRTSMCQRFMSSITA*CQCPSGSDSNSHQVATAHSS 126
           G   + T  C      + + CQCPSG+ + ++   T+ SS
Sbjct: 581 GSQCQITQQCLGNSQCMNSFCQCPSGTTNVNNFCTTSSSS 620


>AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical
           protein T03D3.1 protein.
          Length = 515

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/55 (20%), Positives = 23/55 (41%)
 Frame = +3

Query: 45  HVIHHGIMPMSVWFGLKFAPGGHSTFFALLNTFVHIVIYFYYMVAAMGPKYQKYI 209
           H++  G+  ++  +G    P   S+ +  +   + +  Y Y +   M  KY   I
Sbjct: 167 HIVSAGLPTVASVYGTSLYPEHDSSLYDKIFNLIRLTYYHYAISPDMDRKYNNLI 221


>Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical
           protein R05D11.9 protein.
          Length = 640

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 127 AKNVLWPPGANLSPNQT 77
           A+ V++PP  NL PN T
Sbjct: 554 ARKVMYPPVPNLDPNAT 570


>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 116 HILRVVKYICSHCNLF 163
           H+ +  KY+C+ C+LF
Sbjct: 15  HLFKYGKYLCNSCDLF 30


>U41109-10|AAB37042.2|  169|Caenorhabditis elegans Hypothetical
           protein F52E1.9 protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 98  RTRWPQHILRVVKYICSHCNLFLLYGSRHG 187
           + R+P+ +    +Y+C HC+   L+ S +G
Sbjct: 52  KIRYPREVT-CPRYVCPHCDEQFLFHSTNG 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,476,355
Number of Sequences: 27780
Number of extensions: 103376
Number of successful extensions: 322
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)