Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E23
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   239   7e-64
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   151   3e-37
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   2.3  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   9.3  
AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  239 bits (585), Expect = 7e-64
 Identities = 109/145 (75%), Positives = 124/145 (85%)
 Frame = +3

Query: 42  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 221
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 222 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAP 401
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+YKGLDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 402 CLRRRTYRAHGRINPYMSSPCHIEV 476
            LRRRTYRAHGRINPYMSSPCHIEV
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEV 150


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  151 bits (365), Expect = 3e-37
 Identities = 84/145 (57%), Positives = 94/145 (64%)
 Frame = +3

Query: 42  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 221
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 222 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAP 401
                                    + L     NAE    YKGLDVD LVI+HI V RA 
Sbjct: 66  ------------------------LDLLKNAESNAE----YKGLDVDHLVIEHINVQRAA 97

Query: 402 CLRRRTYRAHGRINPYMSSPCHIEV 476
            LRRRTYRAHGRINPYMSSPCHIEV
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEV 122


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 309 GAGILQISWANDPVWYQTV*LVH 241
           GAG+ +I W N+  W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 168 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 347
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 348 GLD 356
           G +
Sbjct: 554 GYE 556


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 168 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 347
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 348 GLD 356
           G +
Sbjct: 554 GYE 556


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/91 (23%), Positives = 37/91 (40%)
 Frame = +3

Query: 60   NPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGR 239
            N  +S  + G++   H   T  T     K+PL    + ++  +  K C  F R    + +
Sbjct: 1036 NTPRSSISGGTHQTTHTAPTSRTHHDANKVPLNNVYKVIRFYSFWKTCTSFHRIVTMIDK 1095

Query: 240  CAQAKQFGTTQGRWPKKSAEFLLQLLRNAES 332
                 +  T+ G    K   F+  L RNA++
Sbjct: 1096 VVD--EPSTSSGGTTFKKRLFVQYLWRNAKA 1124


>AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical
           protein Y48G1A.1 protein.
          Length = 901

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 122 IGVLEVNTKV*ATRFT*LSRVIRLPRVTTHFLFLPGEN 9
           +G+L   + V   R   + RVI++    TH +FL  EN
Sbjct: 121 LGLLSDGSPVSEPRLVPVPRVIQIEMTNTHTIFLTAEN 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,935
Number of Sequences: 27780
Number of extensions: 240279
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)