Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E21
         (151 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1221 + 9873399-9873869,9873969-9874033,9874226-9874655,987...    28   1.2  
06_03_0333 - 19658344-19658363,19659286-19659916                       27   1.6  
11_04_0445 + 17818190-17818874,17819730-17819749                       26   3.6  
07_03_0998 - 23214548-23214567,23215424-23216120                       26   3.6  
07_03_1794 - 29580767-29584189                                         25   8.4  

>01_01_1221 +
           9873399-9873869,9873969-9874033,9874226-9874655,
           9874656-9874754,9874977-9875240
          Length = 442

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 12  RYTRISVNAIFFGTYPSRKVGYYCIVLVIISFKTRINFR 128
           +YT      IF+ TY S K+GY+  + +    K    ++
Sbjct: 202 KYTFFKPKFIFYATYLSEKIGYWRYITIFRHLKANPEYQ 240


>06_03_0333 - 19658344-19658363,19659286-19659916
          Length = 216

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 144 YMIRYI*N*YES*M-KLLQVLYSNTPLYARDTFRKKSR*LKFAYI 13
           Y  RYI   Y+    +L    YS+ PLY  D FR++ R  K  ++
Sbjct: 63  YKRRYINRDYQDDHNRLFAKYYSDNPLYTDDQFRRRFRMRKHLFL 107


>11_04_0445 + 17818190-17818874,17819730-17819749
          Length = 234

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 102 KLLQVLYSNTPLYARDTFRKKSR*LKFAYI 13
           +L    YS+ PLY  D FR++ R  K  ++
Sbjct: 74  RLFAKYYSDNPLYTDDQFRRRFRMRKHLFL 103


>07_03_0998 - 23214548-23214567,23215424-23216120
          Length = 238

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 102 KLLQVLYSNTPLYARDTFRKKSR*LKFAYI 13
           +L    YS+ PLY  D FR++ R  K  ++
Sbjct: 78  RLFAKYYSDNPLYTDDQFRRRFRMRKHLFL 107


>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 9    PRYTRISVNAIFFGTYPSRKVGYYCI 86
            P  TR+ +    FGT P +K  + CI
Sbjct: 1104 PTRTRVPLRNFLFGTKPKKKSIFACI 1129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,631
Number of Sequences: 37544
Number of extensions: 33210
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 14,793,348
effective HSP length: 30
effective length of database: 13,667,028
effective search space used: 259673532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)