Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E20
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   1.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   3.5  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   3.5  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   3.5  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   4.6  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    25   6.1  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   8.0  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 127 TLRVPLRRRPKTCLVPQLGRLLTSPPARYS 216
           T R  + RRP + +  Q G L+ +PP R S
Sbjct: 44  TARTSIARRPPSTVGSQTGSLVNAPPKRSS 73


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 120 PAHTPGPPQAATQDVSRSPTGEALDVAASAIQ*HCP 227
           P  +  PP    +  S S    ALD+  SA   H P
Sbjct: 490 PTRSDNPPNEKRRRTSSSENSRALDIQLSASDSHSP 525


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 315 FFYINIKNVGIARIQLASES 374
           +FY+NI+N+G  R +L  +S
Sbjct: 647 YFYMNIQNIGTVRFRLYLDS 666


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 200 GDVKSLPSWGTRHVLGRRLRGTRSVCGSKVSRLSPAAGTAVS 75
           G VK +P W    +  +      SV G K +RLS +   A++
Sbjct: 519 GIVKQMPKWSEEELRAQATNLVASVRGWKKTRLSESVRIAIT 560


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 262 CMECCACNCSMHGQC 218
           C +C  C  + HGQC
Sbjct: 508 CFKCVECGITCHGQC 522


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 198 RRQEPPQLGNETRLGSPPEGDPECVREQS 112
           R   P  L  ET +G P E  PE + +QS
Sbjct: 90  RNPVPCPLLGETEIGKPTEFKPEALAKQS 118


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 341 YIFYINIXXXXKVPYRTYVPCML 273
           Y F+IN+     +  +TY PC +
Sbjct: 7   YFFFINLIFAHDLNVKTYKPCTI 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,903
Number of Sequences: 5004
Number of extensions: 36813
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)