Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E20
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 29 1.5
01_05_0230 + 19543410-19543722,19544165-19544238 28 3.5
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107 28 4.6
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089 27 6.0
01_07_0048 - 40741101-40741109,40741110-40741185,40741691-407417... 27 6.0
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 27 8.0
08_02_0478 + 17621678-17623768 27 8.0
07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446 27 8.0
04_03_0513 - 16681227-16683936,16685572-16685966 27 8.0
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 64 AHARETAVPAAGDRRLTLLPHTLRV 138
AHA TA+ AA + R+T LP+ LRV
Sbjct: 86 AHADHTAILAAPETRVTTLPNGLRV 110
>01_05_0230 + 19543410-19543722,19544165-19544238
Length = 128
Score = 28.3 bits (60), Expect = 3.5
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 13 LVVIGSSLLYLVQMRASAHARETAVP--AAGDRRLTLLPHTLRVPLRRRPKTCLVPQLGR 186
L V +S L L R S+ +R TA A G+ R H LR+ RRRP P
Sbjct: 11 LEVSAASWLPLFLRRLSSSSRPTAEESRAEGEEREGAA-HPLRLRCRRRPSPPPAPPSTP 69
Query: 187 LLTSPPARYSNT 222
SPP S+T
Sbjct: 70 PPASPPTPLSST 81
>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
Length = 662
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 153 TQDVSRSPTGEALDVAASAIQ*HCPCIEQLHAQ 251
T D+ + TGEA D+ AI PC HA+
Sbjct: 376 TADLCTAITGEATDIVDCAIYREVPCNSPTHAE 408
>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
Length = 495
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 262 CMECCACNCSMHGQCYCIALAAT 194
C CCAC+ C C AL +
Sbjct: 360 CDRCCACHVEESSSCSCAALVCS 382
>01_07_0048 -
40741101-40741109,40741110-40741185,40741691-40741741,
40742316-40742584
Length = 134
Score = 27.5 bits (58), Expect = 6.0
Identities = 24/74 (32%), Positives = 31/74 (41%)
Frame = +3
Query: 117 APAHTPGPPQAATQDVSRSPTGEALDVAASAIQ*HCPCIEQLHAQHSIHTHA*HARYIGP 296
A A T P AA S +PT LDV A+ P + L S H H H ++ P
Sbjct: 36 AAAPTATAPAAAAAPSSSTPTAPELDVFAAKQYNGRPPLFPLPILRSYHHHH-HHQFREP 94
Query: 297 IRNLFFFFYINIKN 338
I Y+ IK+
Sbjct: 95 ILPQIPKSYLRIKD 108
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 259 MECCACNCSMHGQCYCIALAATSRASPVGERDTS 158
++ CA CS C C+A A + +S + E D +
Sbjct: 1994 LDACAAECS--NNCSCVAYAYANLSSSISEGDVT 2025
>08_02_0478 + 17621678-17623768
Length = 696
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 402 GSYHFGSP*ASHLFAAECLQHST 470
G+ S ASHLF AE QHST
Sbjct: 584 GNVELASDVASHLFVAEPRQHST 606
>07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446
Length = 578
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -3
Query: 215 LYRAGGDVKSLPSWGTRHVLGRRLRGTRSVCGSKVSRLSPAAGTA 81
L R+ SLP WG V R R R CG + + AA TA
Sbjct: 13 LPRSAAAAASLPLWGRPFVRARAARARR--CGEEEASFFLAAATA 55
>04_03_0513 - 16681227-16683936,16685572-16685966
Length = 1034
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 28 SSLLYLVQMRASAHARETAVPAAGDRRLTLLPH 126
+SL YL S +A ++ +PA G RLT L H
Sbjct: 129 TSLRYLDLSENSLNANDSELPATGFERLTELTH 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,401
Number of Sequences: 37544
Number of extensions: 299193
Number of successful extensions: 1060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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