Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E19
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 217 5e-57
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 215 2e-56
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 31 0.77
11_04_0329 - 16442298-16443734 29 1.8
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 2.3
03_05_0592 + 25952603-25952983,25953197-25953547 27 9.5
02_05_0006 - 24897409-24897922,24898041-24898303 27 9.5
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 217 bits (530), Expect = 5e-57
Identities = 102/159 (64%), Positives = 124/159 (77%), Gaps = 2/159 (1%)
Frame = +2
Query: 53 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDNLG 232
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG D G
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 233 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 406
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 407 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 523
++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYV 159
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 215 bits (525), Expect = 2e-56
Identities = 101/159 (63%), Positives = 123/159 (77%), Gaps = 2/159 (1%)
Frame = +2
Query: 53 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDNLG 232
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG D G
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 233 FPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 406
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 407 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 523
++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYV 159
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 142 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSLPLP 26
LF++ T V + F L RC V + +LH C Q+L P
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNLVFP 114
>11_04_0329 - 16442298-16443734
Length = 478
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -1
Query: 477 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 307
R+L A G + + CAP M LAS+ P + LRF S RRG
Sbjct: 56 RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 455 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 324
D+D ++ + F + GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374
>03_05_0592 + 25952603-25952983,25953197-25953547
Length = 243
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 389 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 532
+V + E+PGL E + R+ + + +KE +RRY+V+R
Sbjct: 157 VVARVFDELPGLERLEAVTDVENVRSQRALEKAGFRKEGVLRRYIVRR 204
>02_05_0006 - 24897409-24897922,24898041-24898303
Length = 258
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 167 DLLGDEWKGYVLRVAGGNDNLGFPMKQGVLTNSRVRL--LMSKGHSCYRPRRDGERKRKS 340
DLLG+ W R+ G DN +K T+ + RL S G P+R +K +
Sbjct: 83 DLLGNRWSAIAARLPGRTDN---EIKNVWHTHLKKRLEPKPSSGREAAAPKRKATKKAAA 139
Query: 341 V 343
V
Sbjct: 140 V 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,693
Number of Sequences: 37544
Number of extensions: 325489
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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