Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E19
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   248   3e-66
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    27   8.6  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  248 bits (606), Expect = 3e-66
 Identities = 114/158 (72%), Positives = 132/158 (83%)
 Frame = +2

Query: 53  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDNLG 232
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGND  G
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 233 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 412
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 413 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVV 526
           I GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 453 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 274
           P    T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  +
Sbjct: 269 PTTTTTTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSK 327

Query: 273 RT 268
            T
Sbjct: 328 CT 329


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 194 NLSIRRLEDLHQLQRPYAFHRRY 126
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
           protein C06A5.1 protein.
          Length = 1932

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 176 LEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LRSVPSSADTAAR 12
           L+D+H     +    R+  C  PPL ++  I   G + S   +R + SS  T A+
Sbjct: 807 LDDIHLFADKFKLASRFSRCTSPPL-LSRLISNVGSENSLFAVREMLSSDSTTAK 860


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 362 HQQCNHEQTCVSSHRHDVVCSKSGLLTSRDVHGC*SGLPVS*GSPNCRY 216
           H+QC +   C+S  R    C+ +G    RD+  C + +  + GS  C Y
Sbjct: 417 HRQCLYHSDCISGQR----CTPTG----RDIATCETDISATIGSIQCFY 457


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 194 NLSIRRLEDLHQLQRPYAFHRRY 126
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,195
Number of Sequences: 27780
Number of extensions: 258476
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)