Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E17
(217 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 1.8
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 24 2.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 4.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 4.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 5.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 5.5
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po... 23 5.5
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 23 7.2
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 23 7.2
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 23 7.2
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 23 7.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 23 7.2
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 22 9.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 22 9.6
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 22 9.6
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 109 VDKTHGATARAVLVTACSTNAVGERARL 192
+D HGA + + CSTN + RL
Sbjct: 286 IDYVHGAITHSPPINNCSTNILNHMTRL 313
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 64 IPPTSSAAPHCPTPDVDKTHGATARAVLV---TACSTN 168
+PPTS+++ P P + T+ + L+ T+C+T+
Sbjct: 359 VPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTS 396
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 64 IPPTSSAAPHCPTPDVDKTHGATARAVL---VTACSTN 168
+PPTS+++ P P + T+ + L T+C+T+
Sbjct: 305 VPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTS 342
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 161 LHAVTSTARAVAPCVLSTSGVGQWGAAELV 72
L V + A A+ PC++ ++ VGQ G +++
Sbjct: 409 LRRVITRAIAIIPCLVVSAAVGQSGLNQVL 438
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 40 SGRTAAAVIPPTSSAAPHCPTP 105
+G AA +PP + A P P P
Sbjct: 461 AGMPAAPPLPPAAPAPPPAPAP 482
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 148 RAPHVLWRRAFYR 110
R P V W RAFY+
Sbjct: 489 RLPEVQWNRAFYK 501
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 55 AAVIPPTSSAAPHCPTPDVDKTHGATARAVLVTACSTNAVGERA 186
++ +PP+ S+ H P+P +A A L +A + N++ R+
Sbjct: 1516 SSTLPPSQSSFAHVPSPAPPAPQHPSA-AALSSAPADNSMPHRS 1558
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/45 (20%), Positives = 24/45 (53%)
Frame = +1
Query: 55 AAVIPPTSSAAPHCPTPDVDKTHGATARAVLVTACSTNAVGERAR 189
+++ PP SSA+ +G + A + ++ ++N+ G+ ++
Sbjct: 251 SSIEPPASSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTSK 295
>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 23.0 bits (47), Expect = 5.5
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 37 VSGRTAAAVIPPTSSAAPHCPTPDVDKTHGATARAVLVTACSTNAVGE 180
V TAA V + +AP P DVD T + T A GE
Sbjct: 40 VPSETAAEVKEWSMPSAPTAPKYDVDFTSALNSYKYEGETIPTKAAGE 87
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 133 LWRRAFYRRRELDSGGRRNWWGVSQRRRSVR 41
+WR F L+SG W+G + + +VR
Sbjct: 624 IWRHIFKETVTLNSGISCPWYGTNVKLFTVR 654
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -2
Query: 153 GDEHRTCCGAVRFIDV 106
GD+H C FIDV
Sbjct: 333 GDDHLAVCSNTEFIDV 348
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 185 ARSPTAFVLHAVTSTARAVAPCVLSTS 105
A++PT+ L VTS+ + VL TS
Sbjct: 108 AKTPTSLTLTGVTSSNEDIGVDVLRTS 134
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 213 SSQKRLWESRALAHCVRATRGDEHR 139
SSQ RLW + + +R + D+++
Sbjct: 866 SSQYRLWREKLESEMMRVSSNDDYQ 890
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 55 AAVIPPTSSAAPHCPTPDVDKTHG 126
+A +PPT+ A P P P + G
Sbjct: 490 SAPLPPTTFAPPGVPLPPIPGAPG 513
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 62 TAAAVRPDTAVWV-RARVLPR 3
TA A P T VW+ R RVL R
Sbjct: 84 TAEARMPSTVVWMRRQRVLRR 104
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Frame = +1
Query: 64 IPPTSSAAPHCPTPDVDKT----HGATARAVLVTACSTNAVGERARLPQTF 204
+PP S+ P P P T A +R + T+ ++ P T+
Sbjct: 1061 LPPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTSAPLTY 1111
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 207 QKRLWESRALAHCVRATRGDEHRTCCGAVRFIDV 106
+KRL E R + + +E++TC + +DV
Sbjct: 54 EKRLEEKRKQERYQKFSTSNENKTCLRYLLIVDV 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,461
Number of Sequences: 5004
Number of extensions: 11525
Number of successful extensions: 47
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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