Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E17
         (217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z69659-4|CAA93487.2|  396|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astaci...    27   1.8  
Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U58763-2|AAK68876.1|  673|Caenorhabditis elegans Metaphase-to-an...    27   2.4  
U40426-3|AAP40528.1|  351|Caenorhabditis elegans Diacylglycerol ...    27   2.4  
U40426-2|AAP40526.1|  536|Caenorhabditis elegans Diacylglycerol ...    27   2.4  
Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    26   4.2  
U80450-6|AAB37831.1|  544|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical ...    25   5.5  
U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U13019-6|AAC24443.1|  206|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical...    25   9.7  

>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = +1

Query: 49  TAAAVIPPTSSAAPHCPTPDVDKTHGATARAVLVTACSTNAVGERARLP 195
           T + + PPT+   P  PTP    T+   A     T  +   +G     P
Sbjct: 474 TVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTSPTAP 522


>Z69659-4|CAA93487.2|  396|Caenorhabditis elegans Hypothetical
           protein F07C6.4a protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 143 CSSPRVARTQWASARDSHRRFCD 211
           C +P V RT W SA   HR F +
Sbjct: 331 CQTPLVCRTVWMSAIAQHRFFLE 353


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = -3

Query: 191 SRARSPTAFVLHAVTSTARAVAPCVLSTSGVGQWGA--AELVGGITAA---AVRPDTAVW 27
           SR    + F     TST   ++P  ++  G G WG+  A +VG  T +      P   +W
Sbjct: 13  SRLSLSSIFRYFGTTSTIATMSPKKVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMW 72

Query: 26  V 24
           V
Sbjct: 73  V 73


>U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astacin
           protease protein15 protein.
          Length = 571

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 37  VSGRTAAAVIPPTSSAAPHCPTP 105
           VS  T AA    T+SAAP+ PTP
Sbjct: 509 VSTTTKAAPTTSTTSAAPYSPTP 531


>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -3

Query: 185 ARSPTAFVLHAVTSTARAVAPCVLSTSGVGQWGA--AELVGGITAA---AVRPDTAVWV 24
           +R  + F     TST   ++P  ++  G G WG+  A +VG  T +      P   +WV
Sbjct: 3   SRLSSIFRYFGTTSTIATMSPKKVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWV 61


>U58763-2|AAK68876.1|  673|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 3
           protein.
          Length = 673

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 115 YRRR-ELDSGGRRNWWGVSQRRRSVRIPQY 29
           YRR  E+D    R W+G+ Q    +++P Y
Sbjct: 457 YRRAIEIDPADHRGWYGLGQMYDIMKMPAY 486


>U40426-3|AAP40528.1|  351|Caenorhabditis elegans Diacylglycerol
           kinase protein 2,isoform c protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 173 WASARDSHRRFCDD 214
           WA+  DSHR+ CDD
Sbjct: 254 WATYNDSHRQECDD 267


>U40426-2|AAP40526.1|  536|Caenorhabditis elegans Diacylglycerol
           kinase protein 2,isoform a protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 173 WASARDSHRRFCDD 214
           WA+  DSHR+ CDD
Sbjct: 439 WATYNDSHRQECDD 452


>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 164 VLHAVTSTARAVAPCVLSTSGVGQWGAAELV 72
           ++ A+T T +    CV + +GV  WG   L+
Sbjct: 70  LIQAITKTGQKGLTCVSNNAGVDNWGLGLLL 100


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 49  TAAAVIPPTSSAAPHCPTPDVDKTHGATARA 141
           T A + PP S + P  P+P     HGA+  A
Sbjct: 584 TPAPITPPKSQSPPALPSPS-PSPHGASGAA 613


>U80450-6|AAB37831.1|  544|Caenorhabditis elegans Hypothetical
           protein M01E11.2 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 100 TPDVDKTHGATARAVLVTACSTNAVGERARLPQTFL 207
           TPD  + H  T  + L+ ACS N    R R+ Q F+
Sbjct: 382 TPDEHEEHVCTILSSLLAACSEN---HRQRIVQKFV 414


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 107 TSIKRTAPQHVRCSSPRVAR 166
           T++KRT PQ V  ++P++ R
Sbjct: 670 TTVKRTTPQTVPTTTPKIPR 689


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 107 TSIKRTAPQHVRCSSPRVAR 166
           T++KRT PQ V  ++P++ R
Sbjct: 670 TTVKRTTPQTVPTTTPKIPR 689


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 118 THGATARAVLVTACSTNAVGERARLPQT 201
           TH  T RAV+ T   T    E+ +L  T
Sbjct: 151 THSTTERAVITTTVPTTTTTEKTKLLST 178


>AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical
           protein R11G11.12 protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 76  SSAAPHCPTPDVDKTHGATARAVLV 150
           +SAA H   P+  KTH  T R V++
Sbjct: 220 ASAAHHRSNPNALKTHAVTRRGVMM 244


>U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical
           protein T26C11.4 protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 67  PPTSSAAPHCPTPDVDKTHG 126
           P  + A P CP  DV  +HG
Sbjct: 395 PHFNRAVPRCPPHDVSMSHG 414


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical
           protein T28D9.7 protein.
          Length = 982

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 200 VCGSRARSPTAFVLHAVTSTARAVAPC 120
           +CG RAR+     + A+T   + VA C
Sbjct: 768 LCGKRARNMKCIPMDALTRQMKKVATC 794


>U13019-6|AAC24443.1|  206|Caenorhabditis elegans Hypothetical
           protein T12A2.3 protein.
          Length = 206

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 213 SSQKRLWESRALAHCVRATRGDEHRT 136
           +S+  +WE+R +   +     DEH++
Sbjct: 53  NSESMMWEARKIVRIISRLEADEHQS 78


>AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical
           protein Y54G2A.29 protein.
          Length = 536

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 143 CSSPRVARTQWASARDSHRRFC 208
           CSS   A  QW  A DSH ++C
Sbjct: 421 CSS---ASIQWIRAHDSHVKYC 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,801,125
Number of Sequences: 27780
Number of extensions: 72131
Number of successful extensions: 314
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)