Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E17
         (217 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   2.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   2.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   2.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   2.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   5.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   6.7  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    19   8.8  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    19   8.8  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    19   8.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    19   8.8  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    19   8.8  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    19   8.8  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    19   8.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   8.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    19   8.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   8.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +2

Query: 140 RCS--SPRVARTQWASARDS 193
           RCS  +P + RT  +S RDS
Sbjct: 332 RCSPSNPSITRTGLSSVRDS 351


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 143 TARAVAPCVLSTSGVGQWGAAELVGGITAAAVRP-DTAVWVRARVL 9
           TAR + P    T  +  WG A++V  +      P DT   VR R++
Sbjct: 199 TARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDT---VRRRMM 241


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 143 TARAVAPCVLSTSGVGQWGAAELVGGITAAAVRP-DTAVWVRARVL 9
           TAR + P    T  +  WG A++V  +      P DT   VR R++
Sbjct: 199 TARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDT---VRRRMM 241


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 55  AAVIPPTSSAAP 90
           A +IPPTS A P
Sbjct: 299 AEIIPPTSLAIP 310


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 116 LSTSGVGQWGAAELV 72
           L+T GVG +G  ELV
Sbjct: 370 LATLGVGGFGRVELV 384


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 55  AAVIPPTSSAAP 90
           A +IPPTS   P
Sbjct: 290 AEIIPPTSLVVP 301


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 55  AAVIPPTSSAAP 90
           A +IPPTS   P
Sbjct: 286 AEIIPPTSLTVP 297


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = -3

Query: 152 VTSTARAVAPCVLSTSGVGQ 93
           +  ++R++ PC     G+G+
Sbjct: 72  LAESSRSIDPCASKYCGIGK 91


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 42 RTDRRRCDTP 71
          RT+R RC  P
Sbjct: 70 RTERERCKEP 79


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 42 RTDRRRCDTP 71
          RT+R RC  P
Sbjct: 70 RTERERCKEP 79


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 42 RTDRRRCDTP 71
          RT+R RC  P
Sbjct: 70 RTERERCKEP 79


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 42 RTDRRRCDTP 71
          RT+R RC  P
Sbjct: 70 RTERERCKEP 79


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 42 RTDRRRCDTP 71
          RT+R RC  P
Sbjct: 70 RTERERCKEP 79


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 42 RTDRRRCDTP 71
          RT+R RC  P
Sbjct: 70 RTERERCKEP 79


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 42 RTDRRRCDTP 71
          RT+R RC  P
Sbjct: 70 RTERERCKEP 79


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 67  PPTSSAAPHCPTPD 108
           PP+S+     P+PD
Sbjct: 437 PPSSNPVSPVPSPD 450


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 135 CCGAVR 118
           CCGA+R
Sbjct: 70  CCGAIR 75


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 116 LSTSGVGQWGAAELVGGIT 60
           LST G   W   + +GG T
Sbjct: 136 LSTGGSCYWPRGKNLGGTT 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,448
Number of Sequences: 438
Number of extensions: 1000
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)