Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E16
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   2.9  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    24   3.8  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       24   5.0  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    24   5.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    23   8.8  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 211 NTICNYLKTKKNHKLYKEVMLTSNVKSGNIFVK 113
           N I +YL+  KN  ++KE  +  N+     ++K
Sbjct: 239 NEIRSYLEASKNFNIFKEKEILRNICLDECYLK 271


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 226 SPQSHNTICNYLKTKKNHKLYKEVMLTSNV 137
           SPQ H +  +    ++ HKLY +  LTSNV
Sbjct: 592 SPQEHVSYIDPDAQREKHKLYAQ--LTSNV 619


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 232 QPSPQSHNTICNYLKTKKNHKLYKE 158
           Q  P SH+ I N  +T+K H ++ E
Sbjct: 116 QGKPHSHSFIRNPGETRKTHVVFSE 140


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 95  YTQSRCFNHIY-ILNSCSYFM 36
           Y  SR FNH++ ILN+   F+
Sbjct: 247 YNMSRAFNHVWCILNNKKVFL 267


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 157 PLYTVCDFFSFLNNYI*Y 210
           PL  VCD + F+N+ + Y
Sbjct: 770 PLILVCDRYDFVNDLVFY 787


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 990,711
Number of Sequences: 5004
Number of extensions: 16870
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)