Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E16
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    32   0.076
Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical pr...    27   2.2  
Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical...    25   8.7  

>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 128 KYLCKVK*SSRYTQSRCFNHIYILNSCSYFMKISLY 21
           +Y+C +K S +++  R F  I I+ +C+ FMK S++
Sbjct: 173 RYICSLKSSIQFSPQRRFLFISIVGACALFMKGSVF 208


>Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical
           protein C54C6.4 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 45  RTRIKNINMIKTPRLCISAGLFYF 116
           R RI+  NM K+P+LC +  L YF
Sbjct: 83  RYRIQLSNMPKSPQLCSNLSLHYF 106


>Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 84  RLCISAGLFYFTKI-FPDLTLDVNI 155
           RLC+SA L YF  +  PDL   V+I
Sbjct: 246 RLCVSAYLVYFVVVSIPDLEWYVSI 270


>Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical
           protein B0198.2 protein.
          Length = 247

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 238 QRQPSPQSHNTICNYLKTKKNH 173
           +R P P  +NT  NY     NH
Sbjct: 186 RRSPRPSIYNTYSNYSSNPSNH 207


>AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 84  RLCISAGLFYFTKI-FPDLTLDVNI 155
           RLC+SA L YF  +  PDL   V+I
Sbjct: 246 RLCVSAYLVYFVVVSIPDLEWYVSI 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,315,906
Number of Sequences: 27780
Number of extensions: 87449
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)