Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E14
         (221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   1.0  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   1.4  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    24   3.1  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    23   4.1  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       23   5.5  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    23   7.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   7.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    22   9.5  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    22   9.5  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    22   9.5  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 103  EPHGFL*PNKYVVYRNPDCY 44
            E HGF+  N  +V R+P+C+
Sbjct: 1485 ELHGFIRANAEMVLRSPECF 1504


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 14  PVAVGVGVLFIAI--GVPVYYVFIWLE 88
           P+AVGV     A   GV ++++F+WLE
Sbjct: 83  PLAVGVSPYPNAKLGGVRIFWIFVWLE 109


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
          Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 64 YRNPDCYKQDPDPHRDG 14
          Y NP  YK D D   DG
Sbjct: 8  YENPSSYKNDEDNDDDG 24


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 118 VAHCLEPHGFL*PNKYVVYRNP 53
           + HCLE +  L P  Y + R+P
Sbjct: 258 IRHCLEVNSDLRPTTYQLLRSP 279


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 216 TIRSTESFIISHHNSFESSAKQTNILEHIRLKEL 115
           TI  + S    HH + +S  K  ++LE  R K+L
Sbjct: 5   TIAGSCSLSAYHHTAKQSIDKYKSVLEEERKKQL 38


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 188 LAIIIPSNLQLNKQTFWS 135
           LAI++P N+ LN    WS
Sbjct: 253 LAIVVPINIFLNYLFVWS 270


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 17  VAVGVGVLFIAIGVPVYYVFIWLEKPMWFQTVCNSFNLMCSKMF 148
           +AVGV    ++I   VY+  + L+      +V +S   + +K F
Sbjct: 628 IAVGVVAFLMSIATYVYFSLVPLQSTFGKLSVKDSRKYLANKYF 671


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 219 ETIRSTESFIISHHNSFESSAKQTNILEHIRLKEL 115
           E++ S +S + +HH      +KQ    +H R + L
Sbjct: 662 ESLPSQQSTVSNHHRKESIPSKQPTEGQHARQESL 696


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 17  VAVGVGVLFIAIGVPVYYVFIWLEKPM 97
           +A+G+ + F+A  + VY  F +  K M
Sbjct: 802 IAIGIAIGFLASSLTVYPFFGYRRKNM 828


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 207 STESF-IISHHNSFESSAKQTNILEHIRL 124
           S+ +F II H   F S  +   +LEH+ +
Sbjct: 134 SSSTFSIIQHAAKFASGVESDKVLEHLSM 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,404
Number of Sequences: 5004
Number of extensions: 17916
Number of successful extensions: 37
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)