Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E14
         (221 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68216-1|CAA92459.1|  493|Caenorhabditis elegans Hypothetical pr...    47   2e-06
AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid tr...    39   4e-04
U55369-2|AAK52183.2|  526|Caenorhabditis elegans Udp-glucuronosy...    28   0.78 
Z70035-10|CAA93871.2|  473|Caenorhabditis elegans Hypothetical p...    27   1.8  
AF188748-1|AAF00545.1|  198|Caenorhabditis elegans putative tyro...    27   1.8  
AF022971-11|AAZ32813.1|  265|Caenorhabditis elegans Hypothetical...    27   2.4  
Z72515-2|CAA96682.3|  329|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    25   5.5  
AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical ...    25   5.5  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    25   5.5  
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    25   7.3  
AF098995-8|AAC67477.1|  306|Caenorhabditis elegans F-box b prote...    25   7.3  
Z68004-9|CAA91985.2|  120|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U20861-8|AAA62297.3|  372|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z68216-1|CAA92459.1|  493|Caenorhabditis elegans Hypothetical
           protein F27C8.1 protein.
          Length = 493

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 8   AHPVAVGVGVLFIAIGVPVYYVFI-WLEKPMWFQTVCNSFNLMCSKMFVCLAEDSKE 175
           A P   G+G+L +   VPVY +FI W  KP WF    +S  +   K+F+ + ED ++
Sbjct: 437 AAPRDTGIGLLIMLSAVPVYGIFIGWKNKPKWFNEFIDSSTVFIQKLFMVVDEDKED 493


>AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid
           transporter protein 3 protein.
          Length = 493

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 11  HPVAVGVGVLFIAIGVPVYYVFI-WLEKPMWFQTVCNSFNLMCSKMFVCLAEDSKE 175
           +P    +G+L +  GVPVY +FI W  KP    ++ +S  +   K+F+ +  + +E
Sbjct: 438 NPKDTAIGILIMLSGVPVYLIFIAWKGKPKCIDSLTDSVTIFTQKLFMVVDANKEE 493


>U55369-2|AAK52183.2|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein48 protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 153 QTNILEHIRLKELHTVWNHMGFSSQINT*YTGTPIAI 43
           QT +L H RLK   T   H G++S + + Y G P+ +
Sbjct: 358 QTAVLAHPRLKAFIT---HAGYNSLMESAYAGVPVIL 391


>Z70035-10|CAA93871.2|  473|Caenorhabditis elegans Hypothetical
           protein R09D1.12 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 43  YSNRGSGILRIYLARETHVVPNSVQLF*SNVL 138
           Y+NRG+ I   Y+  +T + P+S+     N L
Sbjct: 95  YTNRGNAIRNSYVQVQTEITPSSILAVQENTL 126


>AF188748-1|AAF00545.1|  198|Caenorhabditis elegans putative
           tyrosine kinase receptorR09D1.12 protein.
          Length = 198

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 43  YSNRGSGILRIYLARETHVVPNSVQLF*SNVL 138
           Y+NRG+ I   Y+  +T + P+S+     N L
Sbjct: 38  YTNRGNAIRNSYVQVQTEITPSSILAVQENTL 69


>AF022971-11|AAZ32813.1|  265|Caenorhabditis elegans Hypothetical
           protein C31B8.16 protein.
          Length = 265

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 14  PVAVGVGVLFIAIGVPVYYVFIWLEKPMWFQTVCNSFNL 130
           P+++   V+F +  +P    F+W     W + + N+ NL
Sbjct: 224 PISIA-NVIFASSPIPAMLSFLWRNPACWSRRIRNTVNL 261


>Z72515-2|CAA96682.3|  329|Caenorhabditis elegans Hypothetical
          protein T11A5.2 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 17 VAVGVGVLFIAIGVPVYYVFIW 82
          V++G+ ++   +G+PV+ V+ W
Sbjct: 20 VSLGINLIICILGLPVFLVYTW 41


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 53  GVPVYYVFIWLEKPMWFQTVCNSFNLMCSKMFVCLAEDS 169
           G+ ++++F+ +  P++F    NS + +  + F C  +DS
Sbjct: 4   GISIFFLFLHI--PIFFVNCSNSTSCVAREEFQCKMDDS 40


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 53  GVPVYYVFIWLEKPMWFQTVCNSFNLMCSKMFVCLAEDS 169
           G+ ++++F+ +  P++F    NS + +  + F C  +DS
Sbjct: 4   GISIFFLFLHI--PIFFVNCSNSTSCVAREEFQCKMDDS 40


>AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical
           protein ZK1025.7 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 195 FIISHHNSFESSAKQTNILEHIRLKELHTVWNHMG-FSSQINT*Y 64
           FI+ +H+S E + K  +  E + L EL   W ++G  SS I+  Y
Sbjct: 189 FIVFYHSSTEDTKKVLDYYEKLGLIELRP-WPNIGELSSNISPMY 232


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
           cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 53  GVPVYYVFIWLEKPMWFQTVCNSFNLMCSKMFVCLAEDS 169
           G+ ++++F+ +  P++F    NS + +  + F C  +DS
Sbjct: 4   GISIFFLFLHI--PIFFVNCSNSTSCVAREEFQCKMDDS 40


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 32  GVLFIAIGVPVYYVFIWLEKPMWF 103
           GVLF+ +   + Y   W+ + +WF
Sbjct: 223 GVLFVWVATRLVYYPFWIIRSVWF 246


>AF098995-8|AAC67477.1|  306|Caenorhabditis elegans F-box b protein
           protein 18 protein.
          Length = 306

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 180 HNSFESSAKQTNILEHIRL 124
           HNS + S KQ +++EH+ L
Sbjct: 13  HNSLQLSLKQMSLVEHLTL 31


>Z68004-9|CAA91985.2|  120|Caenorhabditis elegans Hypothetical
           protein F47B10.5 protein.
          Length = 120

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 101 FQTVCNSFNLMCSKMFVCLAEDSKEL*WLMI 193
           F   CN+      K FVC+  D K + WLMI
Sbjct: 30  FMDNCNNMG----KKFVCIPFDPKFMMWLMI 56


>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +2

Query: 41  FIAIGVPVYYVFIWLEKPMWFQTVCNSFNLM 133
           FI +G+P +++    +   W   + NSF+++
Sbjct: 102 FIFVGIPSFFLIFHAKSVQWRFQLFNSFSMV 132


>U20861-8|AAA62297.3|  372|Caenorhabditis elegans Hypothetical
           protein C28H8.9a protein.
          Length = 372

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 152 KQTFWSTLD*KSCTLFGTT 96
           K++ W  L+ KSCT+ GT+
Sbjct: 302 KRSGWQCLECKSCTICGTS 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,425,147
Number of Sequences: 27780
Number of extensions: 101676
Number of successful extensions: 313
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)