Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E11
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    26   6.1  
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    26   6.1  

>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 94  LSTFYLIIIIFVASKLF 144
           L TF L+ IIFVASK+F
Sbjct: 324 LVTFILVPIIFVASKIF 340


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  IHTSCKFLSTFYLIIIIFVASKLFIFFEP 159
           I + C F++  Y ++II    + FI F P
Sbjct: 90  ISSRCTFIAISYALLIIHFVYRYFILFHP 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,762,356
Number of Sequences: 27780
Number of extensions: 54418
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)