Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E08
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 1.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.1
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 2.5
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 4.3
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 4.3
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 25 5.7
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 5.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 5.7
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 24 7.6
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 24 10.0
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 24 10.0
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 24 10.0
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 139 NSSDDTMSFSSLFSVTGAAFINPIKN 62
N S T SFS FS TG + PI+N
Sbjct: 193 NESFQTPSFSGSFSQTGTYQLTPIRN 218
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 1.1
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Frame = -1
Query: 400 VVSSLVADASVPVSRILVATPFFNE*RPLYSFSPL----SLTSASTKNTXXXXXXXXXXX 233
+ SS V ++S P++ V N P+ S + L S+TS+S N+
Sbjct: 2340 ITSSSVLNSSTPITSSTVV----NTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVN 2395
Query: 232 XXXXXSKNNELRGTVRLTMSYLDEYWTN----SFMNSSDDTMSFSSLFSVTGAAFINPIK 65
+ ++ L + +T S + T+ S +NSS S S L S T +
Sbjct: 2396 TSTPITSSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITSSSVLNSSTPITSSTVVN 2455
Query: 64 NTTPKKSVSCILVSCYLVPNT 2
++TP S S + S + +T
Sbjct: 2456 SSTPITSSSVLNSSTPITSST 2476
Score = 27.1 bits (57), Expect = 1.1
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Frame = -1
Query: 400 VVSSLVADASVPVSRILV---ATPFFNE*RPLYSFSPLSLTSASTKNTXXXXXXXXXXXX 230
+ SS V ++S P++ V +TP + + S +P+ TS++T NT
Sbjct: 3264 ITSSSVLNSSTPITSSTVVNTSTPITSS-TVVNSSTPI--TSSTTLNTSTPITSSSVLNS 3320
Query: 229 XXXXSKNNELRGTVRLTMSYLDEYWT----NSFMNSSDDTMSFSSLFSVTGAAFINPIKN 62
+ + L + +T S + T +S +NSS S S L S T + +
Sbjct: 3321 STAITSSTALNTSTPITSSSVLNSSTAITSSSILNSSTPVTSSSVLNSSTPITSSTVVNS 3380
Query: 61 TTPKKSVSCILVS 23
+TP S + + S
Sbjct: 3381 STPITSSTALNTS 3393
Score = 25.8 bits (54), Expect = 2.5
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Frame = -1
Query: 400 VVSSLVADASVPVSRILVATPFFNE*RPLYSFSPLS----LTSASTKNTXXXXXXXXXXX 233
+ SS V ++S P++ ++ N P+ S S L+ +TS++ NT
Sbjct: 1836 ITSSTVVNSSTPIT----SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 1891
Query: 232 XXXXXSKNNELRGTVRLTMSYLDEYWT----NSFMNSSDDTMSFSSLFSVTGAAFINPIK 65
+ + L + +T S T +S +NSS S S L S T +
Sbjct: 1892 SSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVN 1951
Query: 64 NTTPKKSVSCILVSCYLVPNT 2
++TP S S + S + +T
Sbjct: 1952 SSTPITSSSVLNSSTPITSST 1972
Score = 25.8 bits (54), Expect = 2.5
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Frame = -1
Query: 400 VVSSLVADASVPVSRILVATPFFNE*RPLYSFSPLS----LTSASTKNTXXXXXXXXXXX 233
+ SS V ++S P++ ++ N P+ S S L+ +TS++ NT
Sbjct: 2028 ITSSTVVNSSTPIT----SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 2083
Query: 232 XXXXXSKNNELRGTVRLTMSYLDEYWT----NSFMNSSDDTMSFSSLFSVTGAAFINPIK 65
+ + L + +T S T +S +NSS S S L S T +
Sbjct: 2084 SSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVN 2143
Query: 64 NTTPKKSVSCILVSCYLVPNT 2
++TP S S + S + +T
Sbjct: 2144 SSTPITSSSVLNSSTPITSST 2164
Score = 25.8 bits (54), Expect = 2.5
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Frame = -1
Query: 400 VVSSLVADASVPVSR---ILVATPFFNE*RPLYSFSPLSLTSASTKNTXXXXXXXXXXXX 230
+ SS V ++S P++ + +TP + L S +P+ TS+S N+
Sbjct: 3024 ITSSTVVNSSTPITSSTALNTSTPITSS-TVLNSSTPI--TSSSVLNSSTPITSSTALNT 3080
Query: 229 XXXXSKNNELRGTVRLTMSYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPK 50
+ ++ L + +T S S +NSS S S L S T + + ++TP
Sbjct: 3081 STPITSSSVLNSSTAITSS--------SIVNSSTPITSSSVLNSSTAITSSSILNSSTPI 3132
Query: 49 KSVSCILVSCYLVPNT 2
S S + S + +T
Sbjct: 3133 TSSSILNSSTPITSST 3148
Score = 25.4 bits (53), Expect = 3.3
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Frame = -1
Query: 400 VVSSLVADASVPVSRILVATPFFNE*RPLYSFSPLS----LTSASTKNTXXXXXXXXXXX 233
+ SS V ++S P++ ++ N P+ S S L+ +TS++ NT
Sbjct: 672 ITSSSVLNSSTPIT----SSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLN 727
Query: 232 XXXXXSKNNELRGTVRLTMSYLDEYWT----NSFMNSSDDTMSFSSLFSVTGAAFINPIK 65
+ + L + +T S + T +S +NSS S S L S T +
Sbjct: 728 SSTPITSSTALNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTVVN 787
Query: 64 NTTPKKSVSCILVSCYLVPNT 2
+TP S S + S + +T
Sbjct: 788 TSTPITSSSVLNSSTPITSST 808
Score = 25.0 bits (52), Expect = 4.3
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Frame = -1
Query: 400 VVSSLVADASVPVSRILVATPFFNE*RPLYSFSPLS----LTSASTKNTXXXXXXXXXXX 233
+ SS V ++S P++ ++ N P+ S S L+ +TS+S N+
Sbjct: 3144 ITSSTVVNSSTPIT----SSTTLNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLN 3199
Query: 232 XXXXXSKNNELRGTVRLTMSYLDEYWT----NSFMNSSDDTMSFSSLFSVTGAAFINPIK 65
+ + L + +T S + T +S +NSS S S L S T +
Sbjct: 3200 SSTPITSSTTLNTSTPITSSSVLNSSTAITSSSVLNSSTPITSSSVLNSSTPITSSTVVN 3259
Query: 64 NTTPKKSVSCILVSCYLVPNT 2
+TP S S + S + +T
Sbjct: 3260 TSTPITSSSVLNSSTPITSST 3280
Score = 23.8 bits (49), Expect = 10.0
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Frame = -1
Query: 400 VVSSLVADASVPVSRILV---ATPFFNE*RPLYSFSPLSLTSASTKNTXXXXXXXXXXXX 230
+ SS V ++S P++ V +TP + + S +P+ TS++ NT
Sbjct: 1452 ITSSSVLNSSTPITSSTVVNTSTPITSS-TVVNSSTPI--TSSTVVNTSTPITSSTVVNT 1508
Query: 229 XXXXSKNNELRGTVRLTMSYLDEYWT----NSFMNSSDDTMSFSSLFSVTGAAFINPIKN 62
+ + + + +T S + T +S +NSS S S L S T +
Sbjct: 1509 STPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNT 1568
Query: 61 TTPKKSVSCILVSCYLVPNT 2
+TP S S + S + +T
Sbjct: 1569 STPITSSSVVNSSTPITSST 1588
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 2.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 160 YWTNSFMNSSDDTMSFSSLFSVTGAAF 80
++T F+N+ +S S LFS+ GA F
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHF 540
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 327 SLKNGVATKILETGTDASATN 389
+LK GV ++TG+ ASATN
Sbjct: 254 TLKGGVVVTDVKTGSGASATN 274
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 382 ADASVPVSRILVATPFFNE*RPLYSFSPLSLTSASTKN 269
A S P +R + PF N +P+ + SP+++T++S N
Sbjct: 667 ATDSKPSTR--TSPPFVNNTKPIVAKSPVTVTASSETN 702
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 5.7
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -1
Query: 169 LDEYWTNSFMNSSDDTMSFSS 107
L E WTNS N SDD FSS
Sbjct: 472 LAESWTNSAKN-SDDPSKFSS 491
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 5.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 187 RLTMSYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPK 50
R + SY DE + SSD + SS FS + + P + T PK
Sbjct: 320 RRSRSYSDE--DEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPK 363
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 5.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 75 LIKAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSLFF 215
+IK A + + + E L+ + VQ + D +++T+PLN +FF
Sbjct: 3548 IIKDAELWDVSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNIIFF 3594
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 149 ICPVLVQVRHCQSYSSSQFVIL 214
ICP+ V+H YSSS+ +L
Sbjct: 250 ICPMQATVKHRMVYSSSKLGLL 271
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 102 NNDEKLIVSSELFINEFVQYSSKYDIVSL 188
+N E ++S + +NE +QY S + ++S+
Sbjct: 927 SNAETSSITSVISVNEALQYPSGFALISI 955
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 23.8 bits (49), Expect = 10.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -1
Query: 148 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKSVSCILVSCYLV 11
S+M + + ++ A ++PIK T S I SCY+V
Sbjct: 101 SYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTVASIISFSCYIV 146
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 166 PSTTLSVLQFLSIRYSLTKTRMIRHRKTRIPI*QCSSL 279
PST LS+L SL R+ KTRI + + S+L
Sbjct: 257 PSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTL 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,984
Number of Sequences: 5004
Number of extensions: 25637
Number of successful extensions: 92
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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