Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E08
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 31 0.34
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 2.4
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 27 4.1
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 27 5.5
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 27 5.5
10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150... 27 7.2
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 27 7.2
04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826... 27 7.2
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 27 7.2
02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276... 27 7.2
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 27 7.2
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 26 9.5
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 26 9.5
03_05_0112 + 20955777-20956359,20956533-20957707 26 9.5
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 26 9.5
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 69 IGLIKAAPVTEN-NDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSLF 212
I + K+ PV + + KL+V+ E+ EF+ YD+ + VP NS+F
Sbjct: 167 IVIFKSPPVLQEVHKGKLVVNGEVRNEEFILEPPSYDMNPVQVPENSVF 215
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 81 KAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 209
+AAP+ E+ VSS L ++E ++ S D VS P L
Sbjct: 1575 EAAPILEDRGMAPSVSSRLSLDEIIEISCDLDAVSALPPAKPL 1617
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 73 PIKNTTPKKSVSCILVSC 20
PIKN TPK+S S + SC
Sbjct: 335 PIKNDTPKRSASYVCNSC 352
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 54 GVVFLIGLI-KAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSLF 212
G VF+ ++ KA E D KLIV+ + EFV Y++ + VP +F
Sbjct: 304 GDVFIKRVVAKAGDYVEVRDGKLIVNGVVQDEEFVLEPHNYEMEPMLVPEGYVF 357
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 75 LIKAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSL 188
L+ +AP N KLI +SE F N+ V+ ++++L
Sbjct: 263 LLSSAPSRRMNPSKLIDNSEFFQNKLVETIQFMEVLNL 300
>10_06_0136 -
11114409-11114576,11114656-11114784,11114873-11115016,
11115130-11115299,11116441-11116528,11116590-11116652,
11116678-11116799,11118506-11118671
Length = 349
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 60 VFLIGLIKAAPVTENNDEKLIVSSELFI 143
V+L L+ P+TE N KLI++S +I
Sbjct: 78 VYLWTLVYLDPITEANSFKLIIASTFYI 105
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 169 STTLSVLQFLSIRYSLTKTRMIRHRKTRIPI*QC 270
S LSVL L+ L ++R RH K +I + QC
Sbjct: 746 SKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQC 779
>04_04_1328 -
32682087-32682200,32682290-32682365,32682442-32682698,
32682788-32682886,32682965-32683163,32683247-32683460,
32683615-32683683,32683772-32684096,32684211-32684381,
32684461-32684625,32684701-32684814,32685228-32685336,
32685403-32685464,32685726-32685797,32686401-32686436,
32686506-32686634
Length = 736
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 169 STTLSVLQFLSIRYSLTKTRMIRHRKTRIPI*QC 270
S LSVL L+ L ++R RH K +I + QC
Sbjct: 608 SKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQC 641
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 169 STTLSVLQFLSIRYSLTKTRMIRHRKTRIPI*QC 270
S LSVL L+ L ++R RH K +I + QC
Sbjct: 746 SKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQC 779
>02_04_0664 +
24826714-24826842,24826912-24826947,24827551-24827622,
24827882-24827943,24828010-24828646,24828722-24828886,
24828966-24829136,24829251-24829575,24829663-24829731,
24829886-24830099,24830183-24830381,24830460-24830558,
24830648-24830904,24830981-24831056,24831146-24831259
Length = 874
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 169 STTLSVLQFLSIRYSLTKTRMIRHRKTRIPI*QC 270
S LSVL L+ L ++R RH K +I + QC
Sbjct: 746 SKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQC 779
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 169 STTLSVLQFLSIRYSLTKTRMIRHRKTRIPI*QC 270
S LSVL L+ L ++R RH K +I + QC
Sbjct: 746 SKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQC 779
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 99 ENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLN 203
ENND +S + N + + S+Y IVS+ P +
Sbjct: 273 ENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFD 307
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 81 KAAPVTENNDEKLIVSSELFINEFVQYSSK 170
KAA T N DE+L F + VQ+ SK
Sbjct: 91 KAAATTSNTDEELCAHFVRFEEDMVQFISK 120
>03_05_0112 + 20955777-20956359,20956533-20957707
Length = 585
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 166 PSTTLSVLQFLSIRYSLTKTRMIRHRKTRIPI*QCSSLKLTSMIKEKRSIKAFTH*KTVW 345
P T S+++F+ + +T M R+R R P+ K +K+ A K VW
Sbjct: 513 PPKTDSLVRFIQ-NFLEKETTMPRNRYWRKPVKSPVPAKKFEQSAQKKPSSAPKS-KKVW 570
Query: 346 LPKF*KPAPMHQQ 384
K PAP H +
Sbjct: 571 KEKLKTPAPSHPE 583
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 99 ENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLN 203
ENND +S + N + + S+Y IVS+ P +
Sbjct: 237 ENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFD 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,055,337
Number of Sequences: 37544
Number of extensions: 140926
Number of successful extensions: 278
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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