Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E08
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical pr...    30   0.70 
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    29   1.6  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    29   1.6  
U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine recept...    27   5.0  
U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine recept...    27   5.0  
U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine recept...    27   5.0  
AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.      27   5.0  
U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical p...    26   8.7  

>U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical
           protein C30G4.5 protein.
          Length = 85

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 175 SYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFIN 74
           S LDE W +S  + SDD++   S  S TG  F N
Sbjct: 40  SILDEKWRSSCSDDSDDSLPVGSYIS-TGQCFFN 72


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 93  VTENNDEKLIVSSELFINEFVQYSSKYDIV 182
           VT+  D   + +S+LFI+ FV+ + KYD++
Sbjct: 420 VTDARDHLKMQNSKLFISSFVRDNLKYDLI 449


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 93  VTENNDEKLIVSSELFINEFVQYSSKYDIV 182
           VT+  D   + +S+LFI+ FV+ + KYD++
Sbjct: 420 VTDARDHLKMQNSKLFISSFVRDNLKYDLI 449


>U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformc protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 148 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 44
           SF  SS  TMS SS  + T +  IN   N  PKK+
Sbjct: 240 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 274


>U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformb protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 148 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 44
           SF  SS  TMS SS  + T +  IN   N  PKK+
Sbjct: 257 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 291


>U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine receptor
           protein 3, isoforma protein.
          Length = 605

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 148 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 44
           SF  SS  TMS SS  + T +  IN   N  PKK+
Sbjct: 255 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 289


>AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 148 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 44
           SF  SS  TMS SS  + T +  IN   N  PKK+
Sbjct: 257 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 291


>U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical
           protein C25B8.5 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 400 VVSSLVADASVPVSRILVATPFFNE*RPLYSFSPLSLTSAST 275
           + S + A   + + + LV  P  N  RPLYS+ P  L S S+
Sbjct: 264 ITSLIYAPYRLTIKKFLVNIPVGN--RPLYSYQPDGLQSDSS 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,119,081
Number of Sequences: 27780
Number of extensions: 135549
Number of successful extensions: 344
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)