Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E07
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   1.8  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    23   5.3  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    23   7.1  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    23   7.1  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    22   9.3  

>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 51  EIFHSKRYVIDIIIDFYSFSNMNIINLLYVHTK 149
           EI H K+ +I  I +     N+  + L Y+H+K
Sbjct: 479 EIRHKKQRLIKQITNIMHNFNLEFVTLSYLHSK 511


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 81  DIIIDFYSFSNMNIINLLYVHTK 149
           D +++F S SN  ++NLL++H K
Sbjct: 370 DELVNFKS-SNEMMMNLLFIHVK 391


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 159 DQVIWYVRTINL*YSCWKNYKNQL 88
           D+++ Y++TIN+     + YKN L
Sbjct: 19  DEIVNYLKTINIPDDVTEWYKNSL 42


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -3

Query: 170 INNKIKSFGMYVQ*IYNIHVGKTIKXXXXXXXISFRMKYFLFLLNLSRFCSPGDPL 3
           + ++++S  +YV+   NI + +          IS  MK++L LL++S +    DPL
Sbjct: 137 LKSELESIFVYVREQRNI-IMEIFANRFNSTHISPGMKHYLLLLSVSFYGIQNDPL 191


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 54  IFHSKRYVIDIIIDFYSFSNMN 119
           ++H+KR   D+  DF+S + ++
Sbjct: 155 LYHTKRLSYDVKCDFFSAARIS 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,660
Number of Sequences: 5004
Number of extensions: 9582
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)