Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E07
         (181 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-10|AAA81495.2|  186|Caenorhabditis elegans Hypothetical p...    27   1.8  
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    25   5.4  

>U40800-10|AAA81495.2|  186|Caenorhabditis elegans Hypothetical
           protein D2096.2a protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 54  IFHSKRYVIDIIIDFYSFSNMNIINLLYVHTK*LDLIINLFL 179
           +  + RY      DF  ++N  I NLLY  T     II LFL
Sbjct: 26  LLETDRYERPPFNDFKKWNNRIISNLLYFQTNYFVTIITLFL 67


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 87  IIDFYSFSNMNIINLLYVH 143
           IID YS S+ + +NLL VH
Sbjct: 888 IIDGYSISDNSAVNLLQVH 906


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,744,335
Number of Sequences: 27780
Number of extensions: 51290
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)