Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E06
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0241 - 23551471-23551591,23551755-23551833,23553140-235533...    27   6.0  
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420...    27   8.0  
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891...    27   8.0  

>05_05_0241 -
           23551471-23551591,23551755-23551833,23553140-23553334,
           23553466-23553518,23553642-23553742,23553844-23553918,
           23554033-23554272,23554369-23554490,23554582-23554706,
           23554830-23554909,23555064-23555261
          Length = 462

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +1

Query: 172 RLLNVLEFSLLSPCL*IFA 228
           +LLN L FSLL PCL IFA
Sbjct: 62  KLLNALVFSLLLPCL-IFA 79


>11_06_0025 -
           19341127-19341339,19341426-19341620,19341912-19342088,
           19342505-19342672,19343533-19343574,19344129-19344214,
           19345218-19345545
          Length = 402

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 118 ETQMRARLRARARISNRTAPVSRTRLHWP 32
           +T+  AR+ A +  S+  APV+ T   WP
Sbjct: 42  DTERMARIEAASDTSSAAAPVAPTAAPWP 70


>03_05_0741 + 27287414-27287479,27287887-27287946,27288949-27289112,
            27289158-27289241,27290115-27290178,27291181-27291334,
            27291605-27291675,27292138-27292242,27292734-27292826,
            27293672-27293746,27294114-27294199,27294293-27294499,
            27294585-27294684,27294765-27294835,27294960-27295041,
            27295920-27296078,27296480-27296533,27296775-27296817,
            27297630-27297712,27298569-27298631,27298720-27298794,
            27299620-27299745,27300267-27300499,27300611-27300655,
            27300953-27301019,27302095-27302166,27302276-27302520,
            27302598-27302655,27302743-27302910,27303224-27303298,
            27303412-27303669
          Length = 1101

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 121  DRHV*SYCYCTVVNETSRLLNVLEFSLLSPCL 216
            DRHV +  Y T  +    L+NVL +  L  CL
Sbjct: 924  DRHVRTRLYFTSESHIHSLMNVLRYCNLDECL 955


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,979,837
Number of Sequences: 37544
Number of extensions: 135452
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)