Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E06
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-4|AAF60758.2|  194|Caenorhabditis elegans Hypothetical ...    28   3.1  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AC024810-4|AAF60758.2|  194|Caenorhabditis elegans Hypothetical
           protein Y54E10A.7 protein.
          Length = 194

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 133 KRVGLETQMRARLRARARISNRTAPVSRTRLHW 35
           K  G+E   RARL    RI  RT    R  L W
Sbjct: 25  KTGGIEPSRRARLEVLRRIVTRTVREERAELKW 57


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 157 QLYNNNNSKRVGLETQMR 104
           QL NNN+ +R+ LE QMR
Sbjct: 565 QLNNNNDQERIHLEEQMR 582


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,056,129
Number of Sequences: 27780
Number of extensions: 133852
Number of successful extensions: 231
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)