Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E06
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   4.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   7.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              20   9.7  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              20   9.7  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 308 LTYVCCNQTKKD*QWPILLRYDSIQEFANI 219
           +TY CC +   D  + I +R  ++  F N+
Sbjct: 172 ITYQCCPEPYVDVTFTIQIRRRTLYYFFNL 201


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 308 LTYVCCNQTKKD*QWPILLRYDSIQEFANI 219
           +TY CC +   D  + I +R  ++  F N+
Sbjct: 172 ITYQCCPEPYVDVTFTIQIRRRTLYYFFNL 201


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 308 LTYVCCNQTKKD*QWPILLRYDSIQEFANI 219
           +TY CC +   D  + I +R  ++  F N+
Sbjct: 172 ITYQCCPEPYVDVTFTIQIRRRTLYYFFNL 201


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 308 LTYVCCNQTKKD*QWPILLRYDSIQEFANI 219
           +TY CC +   D  + I +R  ++  F N+
Sbjct: 172 ITYQCCPEPYVDVTFTIQIRRRTLYYFFNL 201


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 308 LTYVCCNQTKKD*QWPILLRYDSIQEFANI 219
           +TY CC +   D  + I +R  ++  F N+
Sbjct: 172 ITYQCCPEPYVDVTFTIQIRRRTLYYFFNL 201


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 308 LTYVCCNQTKKD*QWPILLRYDSIQEFANI 219
           +TY CC +   D  + I +R  ++  F N+
Sbjct: 172 ITYQCCPEPYVDVTFTIQIRRRTLYYFFNL 201


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 308 LTYVCCNQTKKD*QWPILLRYDSIQEFANI 219
           +TY CC +   D  + I +R  ++  F N+
Sbjct: 240 ITYQCCPEPYVDVTFTIQIRRRTLYYFFNL 269


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 308 LTYVCCNQTKKD*QWPILLRYDSIQEFANI 219
           +TY CC +   D  + I +R  ++  F N+
Sbjct: 240 ITYQCCPEPYVDVTFTIQIRRRTLYYFFNL 269


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +2

Query: 272 NLF*FDYNTHMSKITMKNFVV 334
           N + ++YN +  K+  KN+++
Sbjct: 327 NNYKYNYNNYNKKLYYKNYII 347


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 298 CVVIKLKKIDSGQSFCGMTLYRNSQIFKGKGRVKKTL 188
           C++ K    D G +F  + +   ++IF  +  V K +
Sbjct: 65  CLIKKFNGYDDGGNFNEVVIREIAEIFLDENGVNKLI 101


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 198 FTLPLPLNICEFLYRVIPQ 254
           + LP P N   F YR+ P+
Sbjct: 236 YILPDPYNTKFFRYRITPE 254


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = -2

Query: 298 CVVIKLKKIDSGQSFCGMTLYRNSQIFKGKGRVKKTL 188
           C++ K    D G +F  + +   ++I+  +  V K +
Sbjct: 65  CLIKKFNAYDDGGNFNEVVVREIAEIYLDENEVNKLI 101


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 327 KFFIVIFDICV 295
           K F++IF ICV
Sbjct: 2   KTFVIIFAICV 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,096
Number of Sequences: 438
Number of extensions: 1937
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)