Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E05
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    25   1.8  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    24   2.4  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    24   3.1  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    23   5.4  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    23   5.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    22   9.5  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    22   9.5  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    22   9.5  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    22   9.5  

>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 102 YPYYALLGNRYPN 64
           +PYY LL   YPN
Sbjct: 59  FPYYPLLNKNYPN 71


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 45  LDNAAVSWGIYCLR 86
           ++ AA SWGI CLR
Sbjct: 176 INKAAESWGIRCLR 189


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 119 ILPSSFTHIMRS*AIDTPTHRSIVQNIKLRLFTD 18
           +LP+S   +     +DT  H+SI QN  L + +D
Sbjct: 204 LLPNSSGTLTDQRGLDTIKHKSIEQNEILHVISD 237


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 156 ISRSQISMYIVPYSSLLIYPYYALL 82
           +SRS IS + VPY   L    + +L
Sbjct: 280 LSRSSISFFTVPYLRTLAITQFIIL 304


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 81  GNRYPNSPQH 52
           G+RY NSPQH
Sbjct: 177 GHRYNNSPQH 186


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 120 YSSLLIYPYYALLGNRYPNSP 58
           Y+SLL+  +   LGNR   SP
Sbjct: 589 YASLLVTCFVLALGNRPHGSP 609


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 114  SLLIYPYYALLGN 76
            +LLI P+YALL N
Sbjct: 1271 ALLIEPHYALLSN 1283


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 144 QISMYIVPYSSLLIYPYYALLGNRYPNSPQ 55
           ++S +I P SS       ++  N +PN PQ
Sbjct: 32  KLSYHISPLSSRFSLADISVKENNHPNGPQ 61


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 133 VYCTLFFPPHL 101
           VYC  FF PH+
Sbjct: 710 VYCMSFFSPHM 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,238
Number of Sequences: 5004
Number of extensions: 10359
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)