Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E05
         (157 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646...    27   1.6  
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377...    26   4.8  
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    25   6.3  
03_02_0797 - 11296426-11297258,11297745-11297901                       25   8.3  

>03_05_0220 +
           22063411-22063468,22063535-22063545,22064478-22064609,
           22064696-22065799,22065874-22066566,22066968-22067019,
           22067861-22067916,22067917-22068063
          Length = 750

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 99  PYYALLGNRYPNSPQHCP 46
           P+Y LLG +YP  PQ  P
Sbjct: 145 PFYELLGEKYPAFPQQQP 162


>04_03_0306 +
           14136338-14136686,14137408-14137442,14137701-14137778,
           14138046-14138124,14138731-14138823,14139472-14139556,
           14140270-14140345,14140669-14140794,14141039-14141137,
           14141238-14141339,14141561-14141671,14141809-14141904,
           14142488-14142539,14142624-14142735,14142879-14142943,
           14144124-14144521,14145236-14145330,14145989-14146015,
           14146081-14146156,14146368-14146421,14146741-14146863,
           14146955-14147023
          Length = 799

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 140 YQCILYLILPSSFTHIMRS*AIDTPTHRSIVQNIKLR 30
           Y  ILYL +PS F  I+R   I+   H +IV ++ L+
Sbjct: 376 YASILYLRVPSFFQMILRGKEIE---HHNIVTDMMLK 409


>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 144 QISMYIVPYSSLLIYPYYALLGNRYPNSPQH-CPKYKIKIVYR 19
           + +++++ YS    Y  Y   GN YP SP+  C + +  +V R
Sbjct: 585 KFNVFVINYSHFQNYCSYWEDGNCYPQSPKRLCTESRNSLVER 627


>03_02_0797 - 11296426-11297258,11297745-11297901
          Length = 329

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 129 IVPYSSLLIYPYYALLGNRYPNSPQHCP 46
           I P   LLI   ++  GNR+    QH P
Sbjct: 78  ITPQEQLLILELHSRWGNRWSKIAQHLP 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,217,570
Number of Sequences: 37544
Number of extensions: 58513
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)