Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E05
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF016448-4|AAY86192.1|   91|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical
           protein R02F2.8 protein.
          Length = 494

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 120 YSSLLIYPYYALLGNRYPNSPQHCPKYKIKIVYRQIPR 7
           Y++L +   + ++ NR+P    HC K   ++ YR I R
Sbjct: 70  YTALELCWTWKIMQNRWPEYRDHCRKPYGEMAYRTIGR 107


>U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical
           protein B0280.3 protein.
          Length = 251

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 84  LGNRYPNSPQHCPKYKIKIVYRQIPRA 4
           LG+RYPN P        + + R IPRA
Sbjct: 142 LGDRYPNVPIEVLPLAAQPLLRSIPRA 168


>AF016448-4|AAY86192.1|   91|Caenorhabditis elegans Hypothetical
           protein F41E6.15 protein.
          Length = 91

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 123 PYSSLLIYPYYALLGNRYPNSPQH 52
           PYS    YP Y +LG R  +  +H
Sbjct: 48  PYSYYYYYPSYYVLGKRSTDGVEH 71


>Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.14 protein.
          Length = 354

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 150 RSQISMYIVPYSSLLIYPYYALLGN 76
           R  ++MY  P     I+P Y L+ N
Sbjct: 181 REALTMYPCPTEEFFIFPIYILISN 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,770,317
Number of Sequences: 27780
Number of extensions: 56099
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)