Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E04
(306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.050
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 0.47
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 1.9
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 1.9
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.4
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 24 4.4
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 24 4.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 24 4.4
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 24 4.4
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 24 4.4
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 24 4.4
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 5.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 24 5.8
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 24 5.8
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 23 7.7
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 23 7.7
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 23 7.7
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.050
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSD-HSGVNSSERYIVDNQSGHNKNSATYI 190
S + +S ++ S++++ + S + + R SS HS SS + S +K+S+ +
Sbjct: 365 SSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHK-----SSSSSKSSSAPV 419
Query: 191 TKGIHVEHNISKSTQHVTNKSLSDSVTK 274
+ + S+S+ H ++ SLS +K
Sbjct: 420 SSAFYHNSTSSRSSSHSSSHSLSSLSSK 447
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 0.47
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 8 ARSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 187
A+S +++S + T + I SG+ + S+ S +NSS + + S + S++Y
Sbjct: 559 AQSSSLSSSNSSALTHISSSIVSSGSSSALSSSTIVSSINSSSSVFISSVSSSLQYSSSY 618
Query: 188 ITK 196
+T+
Sbjct: 619 VTE 621
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 1.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 107 SDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEHNISKSTQHVTNK 250
+D + + RY V Q H K S I GI ++ N+S++ +V +K
Sbjct: 223 NDSTCLTKEARYFVKEQ--HKKLSRKPIKIGIPIDWNVSETHPNVLDK 268
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 1.9
Identities = 20/93 (21%), Positives = 38/93 (40%)
Frame = +2
Query: 8 ARSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 187
+R + +NS +S+ + + S VS DH +SSE + ++ + S+
Sbjct: 75 SRQELLNSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAI 134
Query: 188 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTSIE 286
K + I K LSD + +++E
Sbjct: 135 PEKDMDRLKKIING-----EKKLSDQIRTSALE 162
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 154 PKWA*QKFCDIYNKRNPRRTQYFEIYST 237
PKWA + NK + QYF+I S+
Sbjct: 245 PKWASPELRSEENKAHKHMEQYFDINSS 272
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 137 RYIVDNQSGHNKNSATYITKGIHVEHNISKSTQHVTNKSLSD 262
+YI DN +N ++ TY +E K + L+D
Sbjct: 413 KYIFDNCRSYNDSNTTYYKNADRLEKFFQKKLRETEYSHLAD 454
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +2
Query: 122 VNSSERYIVDNQSGHNKNSATYITKGIHVEHNISKSTQHVTNKSLSDS 265
+N+ Y VDN + H++ + GI+V +++ S+ ++ + S
Sbjct: 82 INTIRVYQVDNSANHDECMSALQDAGIYVILDLATSSNSISRLDAASS 129
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 24.2 bits (50), Expect = 4.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 274 FCHTITKTLIGNMLSRFRN 218
F H+ TK L G L+RF N
Sbjct: 25 FVHSSTKELSGESLARFNN 43
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 4.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 188 ITKGIHVEHNISKSTQHVTNKSLSDSVTKTS 280
ITK H H I K TN++ ++V K S
Sbjct: 306 ITKHNHPAHEIRKQLLSCTNQTNQNNVVKNS 336
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/61 (21%), Positives = 28/61 (45%)
Frame = +2
Query: 104 SSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEHNISKSTQHVTNKSLSDSVTKTSI 283
S ++ N S+ ++ S + KN++ T +N K+ QH S ++T ++
Sbjct: 366 SEQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKISSKPTLTNATL 425
Query: 284 E 286
+
Sbjct: 426 Q 426
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 119 GVNSSERYIVDNQSGHNKNSATYITKGIHV 208
G+N+ Y VDN + H+K GI+V
Sbjct: 79 GINTVRVYQVDNSADHDKCMNALSEAGIYV 108
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 23.8 bits (49), Expect = 5.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSGTHTQR 97
+ N+ SR+ S NN Q G + Q+
Sbjct: 344 TSNIGSRVVSRSGQNNNQPAQPGQYNQQ 371
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.8 bits (49), Expect = 5.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 65 DIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSAT 184
++KQ + + SS+H N VDN S NKNS++
Sbjct: 34 NVKQEKSDSTLSSSSNHDS-NHDTPADVDNSSNVNKNSSS 72
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 23.8 bits (49), Expect = 5.8
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 110 DHSGVNSSERYI-VDNQSGHNKNSATYITKGIHVEHN 217
D G+ + +I D Q ++NSA + +HVEH+
Sbjct: 575 DQGGLQLTVPHINTDVQCHRSRNSACEFPESMHVEHS 611
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 23.4 bits (48), Expect = 7.7
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +2
Query: 47 STSNNQDIKQSGTHTQRVVSSDHSGVNS---SERYIVDNQSGHNKNSATYITKGIHVEHN 217
+T N D H R SS HS NS ++ V + + K A H +
Sbjct: 14 NTLGNNDENHPSNHIARAKSSLHSSENSLVNGKKATVSSTNVPKKRHALDDVSNFHNKEG 73
Query: 218 ISKSTQHVTNKSLSDSV-TKTSIE 286
+ ++++ + + SV T+ ++E
Sbjct: 74 VPLASKNTNVRHTTASVSTRRALE 97
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 219 ILCSTWIPFVIYVAEFLLCPLWLSTIYL 136
+ CS WI +I +FL C + S ++
Sbjct: 10 LTCSKWIHSIIKTKKFLYCRHYSSKSFI 37
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSG 82
S ++ S I+ + T+N QDI Q G
Sbjct: 88 SISLESAISPNGTTNEQDIAQQG 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,326,739
Number of Sequences: 5004
Number of extensions: 27535
Number of successful extensions: 92
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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