Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E04
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 31 0.18
10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994... 29 0.55
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 1.7
01_01_0057 - 435295-435731,435866-435914,436041-436437,437807-43... 28 1.7
08_02_0648 - 19694538-19696569,19697151-19697998 27 2.2
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 2.2
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319... 27 2.9
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 27 2.9
02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474... 27 2.9
01_05_0525 + 22928295-22928492,22929435-22929584,22929679-229298... 27 2.9
06_03_0018 + 15503084-15503452 26 5.1
06_01_0589 + 4235361-4235433,4236484-4237187,4237584-4237805,423... 26 5.1
07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614... 26 6.7
07_01_0084 + 657846-658538,660652-661920 26 6.7
03_01_0380 + 2955102-2955357,2955468-2956189 26 6.7
09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341 25 8.9
06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721... 25 8.9
04_01_0229 - 2897484-2900402 25 8.9
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 31.1 bits (67), Expect = 0.18
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 107 SDHSGVNSSERYIVD--NQSGHNKNSATYITKGIHVEHNISKSTQHVTNKSLSDS 265
SDHS +NSS + +D SG N + +T + H+ S S+ V + S D+
Sbjct: 1033 SDHSDINSSTNFSIDAVKTSGLNSWTPVPVTNTVRSTHSNSISSTSVPSSSSPDN 1087
>10_08_0460 -
18098187-18098248,18098331-18098399,18098468-18099434,
18100089-18100808,18100942-18101031,18101076-18101138,
18101223-18101366,18101471-18101527,18101606-18101680,
18101757-18101836,18101937-18102050,18102166-18102258,
18102470-18102553,18102812-18102859,18105207-18105337,
18105903-18106135
Length = 1009
Score = 29.5 bits (63), Expect = 0.55
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 20 NVNSR-ITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITK 196
N NS+ ITQ S N QSGT+ ++ + S + SER +D + H + +++ IT+
Sbjct: 176 NENSKSITQGSKEGNNKTIQSGTNIHQLQDGERS-LKESERNKIDTK--HTEETSSSITQ 232
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +2
Query: 26 NSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIH 205
N+ T+ S+S+ D+K + T T V +HSG+ + ++++A + K
Sbjct: 456 NNTDTEKSSSSAIDVKLAETSTTPTVPQEHSGITEKPSQTSADDVKPSESTAAVVKK--Q 513
Query: 206 VEHNISKSTQHVTNKSLSDSVTKTS 280
+ NI Q S++D+ T S
Sbjct: 514 WQRNIGFQKQ--PQSSVTDAKTPES 536
>01_01_0057 -
435295-435731,435866-435914,436041-436437,437807-437906,
438316-438388,439322-439528
Length = 420
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 199 SFCYICRRIFVMPTLVIHNISFAGIYTRV 113
S C++C FV+PT V + S G RV
Sbjct: 242 SLCFVCETRFVVPTAVGEDFSTCGKQQRV 270
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSGT--HTQRVVSSDHSGVNSSERYIVDNQSGH 166
S+N SRI T+ QD+ +S + H V S H GV+ S+R + GH
Sbjct: 306 SNNNASRIMM--TTRIQDVAKSCSFPHESHVYSMKHLGVDDSKRLFLKRIFGH 356
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.5 bits (58), Expect = 2.2
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 5 EARSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNS---SERYIVDNQSGHNK- 172
E++ ++ S+I S+S+NQDIK + S S SE Y+ DNQ +
Sbjct: 1309 ESKELSLQSKILPESSSDNQDIKCEDPSPTPISKSKEVSPQSKILSESYL-DNQDVEREC 1367
Query: 173 NSATYITKGIHVEHNISKSTQHVTNKSLSDSVTKTS 280
S+ IT+ + ++ S K+ S V + S
Sbjct: 1368 PSSILITESKELAVDLPGSISLAPEKTASTDVGENS 1403
>06_03_1032 +
27029698-27029785,27030640-27031275,27031739-27031993,
27032451-27032605,27032704-27032783,27032891-27033026,
27033228-27033377,27033474-27033641
Length = 555
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 5 EARSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQS 160
E ++ + I + N+D SG+ T+ VVSS+ SS D S
Sbjct: 29 EGPGEHQENTIRDSDEAKNEDCSNSGSVTEAVVSSEEPSDRSSTEEPSDRSS 80
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 210 STWIPFVIYVAEFLLCPLWLSTIYLSLEFTPE 115
S W +YV E C LWLS +++++ TP+
Sbjct: 180 SHWQDMKLYVRE---CILWLSIVFITILCTPQ 208
>02_05_0933 +
32846658-32846729,32847038-32847133,32847243-32847411,
32847608-32847669,32848364-32849320,32850036-32850119,
32850307-32850595,32850645-32850694
Length = 592
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 155 QSGHNKNSATYITKGIHVEHNISKSTQHVTNKSLSDS 265
+ H KN+ KG+HVE + K Q + +K DS
Sbjct: 477 RKNHQKNTGK---KGVHVETSCEKDVQGLQDKDFCDS 510
>01_05_0525 +
22928295-22928492,22929435-22929584,22929679-22929813,
22929914-22929979,22931704-22931793,22932414-22932495,
22932703-22932908
Length = 308
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 95 RVVSSDHSGVNSSERYIVDNQSGHNKNSATYITK 196
R + S H+GV + + +S H+KNS Y+ +
Sbjct: 158 RSMKSRHAGVTVDQMLEILKRSAHDKNSQDYVKR 191
>06_03_0018 + 15503084-15503452
Length = 122
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 105 PPITLV*IPAKDILWITKVGITKILRHI 188
PP +++ P I+W K+ +TK LR +
Sbjct: 78 PPRSIIRPPGLWIVWRIKISVTKFLREL 105
>06_01_0589 +
4235361-4235433,4236484-4237187,4237584-4237805,
4237900-4238559
Length = 552
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 11 RSDNVNSRITQHSTSNNQDIKQSGTHTQRV----VSSDHSGVNSSERYIVDNQSGHNKNS 178
+SD+V + T+ + SNN+ Q +S+HS + + ++ ++ HN +S
Sbjct: 373 KSDDVTTNATEQNGSNNEHDGFDAVSLQETENSNSTSEHSLLGTRSVQVIQMETEHNHSS 432
Query: 179 A 181
A
Sbjct: 433 A 433
>07_03_0380 +
17460078-17460782,17461194-17461252,17461388-17461492,
17461732-17461867,17461919-17461939
Length = 341
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 63 WLFDVEC*VIREL 25
WLFD EC V+R+L
Sbjct: 151 WLFDAECDVLRDL 163
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 245 W*HVE*ISKYCVLRGFLLLYMSQNFCY 165
W HV ++C ++ F + MS +F Y
Sbjct: 480 WGHVHRYERFCPMKNFQCVNMSSSFVY 506
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 11 RSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERY 142
++ N+N + S+S+N++ G SSD SG + S +
Sbjct: 145 KNSNINPKDAASSSSDNEENSLDGESDSSDESSDDSGSSESSEH 188
>09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341
Length = 353
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 83 THTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYIT 193
T T +SS+HSG + SE +Q Y+T
Sbjct: 95 TATANTISSEHSGTDDSEAQSAPSQDFLCSTQVPYLT 131
>06_01_0934 -
7212408-7212794,7212887-7213416,7214192-7214302,
7214322-7214811
Length = 505
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 106 GNNPLGMSA*LFNVLVIRCRMLSNSRINV 20
GN PL ++ N ++I C M+ N+R+N+
Sbjct: 324 GNTPLHLAVKHGNAIIISCLMM-NTRVNL 351
>04_01_0229 - 2897484-2900402
Length = 972
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 17 DNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNK 172
+ + S + HS+ + +K GT + + + V +E + DN SGH +
Sbjct: 482 EGIGSDLGDHSSHH---VKWIGTSNKDLTNKSSDHVEGNESDLNDNSSGHGE 530
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,848,647
Number of Sequences: 37544
Number of extensions: 151596
Number of successful extensions: 357
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -