Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E04
(306 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY204188-1|AAO39192.1| 364|Caenorhabditis elegans nuclear recep... 28 1.1
AF100669-6|AAM97937.1| 242|Caenorhabditis elegans Nuclear hormo... 28 1.1
AF100669-5|AAU05545.1| 364|Caenorhabditis elegans Nuclear hormo... 28 1.1
AF100669-4|AAM97936.1| 395|Caenorhabditis elegans Nuclear hormo... 28 1.1
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 28 1.1
Z81109-3|CAB03246.1| 318|Caenorhabditis elegans Hypothetical pr... 27 2.0
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 27 3.4
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 27 3.4
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 27 3.4
Z73972-9|CAB60280.2| 353|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z71177-10|CAB60279.2| 353|Caenorhabditis elegans Hypothetical p... 26 6.0
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr... 25 7.9
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 25 7.9
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 25 7.9
>AY204188-1|AAO39192.1| 364|Caenorhabditis elegans nuclear receptor
NHR-104 protein.
Length = 364
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 121 CKFQRKIYCG*PKWA*QKFCDIYNKRNP 204
C+F++ + G K + QK DIY +RNP
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNP 88
>AF100669-6|AAM97937.1| 242|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform b protein.
Length = 242
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 121 CKFQRKIYCG*PKWA*QKFCDIYNKRNP 204
C+F++ + G K + QK DIY +RNP
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNP 88
>AF100669-5|AAU05545.1| 364|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform c protein.
Length = 364
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 121 CKFQRKIYCG*PKWA*QKFCDIYNKRNP 204
C+F++ + G K + QK DIY +RNP
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNP 88
>AF100669-4|AAM97936.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform a protein.
Length = 395
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 121 CKFQRKIYCG*PKWA*QKFCDIYNKRNP 204
C+F++ + G K + QK DIY +RNP
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNP 88
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +2
Query: 38 TQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEHN 217
T+ +K+S TH++ + H+ V + I DN GH+ ++ + + IH
Sbjct: 1275 TREWDEGEHHVKESTTHSEHTDGNTHTSVQETITTITDN--GHDADNISTDSLVIHEPAA 1332
Query: 218 ISKSTQ-----HVTNKSLSDSVTK 274
++ TQ H N D VT+
Sbjct: 1333 DNQMTQSIYQPHSDNDDDDDKVTE 1356
>Z81109-3|CAB03246.1| 318|Caenorhabditis elegans Hypothetical
protein R10D12.5 protein.
Length = 318
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = -3
Query: 259 TKTLIGNMLSRFRNIVFYVDSFCYICRRIFVMPTLVIHNISFAGIYTRVIGGNNPLGM-- 86
T L+G + N+ F + F + + ++ +++H+ F Y+ ++ P
Sbjct: 11 TDGLVGPFPCKHMNLCFIIAFFVFATTMLHLLLLIIMHSKVFCNSYSMIVTYGRPTNFSS 70
Query: 85 ----SA*LFNVLVIRCRMLSNSRINVI 17
SA +N V++C +SN+ + ++
Sbjct: 71 SIPNSAPTWNDCVVQC-YISNTCVVIV 96
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 NVNSRITQHSTSN-NQDIKQSGTHTQRVVSSDHSGVNSSER 139
N N QH N NQ+ Q+ Q V ++H G N+ ++
Sbjct: 200 NQNQNSNQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQ 240
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 NVNSRITQHSTSN-NQDIKQSGTHTQRVVSSDHSGVNSSER 139
N N QH N NQ+ Q+ Q V ++H G N+ ++
Sbjct: 200 NQNQNSNQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQ 240
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 NVNSRITQHSTSN-NQDIKQSGTHTQRVVSSDHSGVNSSER 139
N N QH N NQ+ Q+ Q V ++H G N+ ++
Sbjct: 200 NQNQNSNQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQ 240
>Z73972-9|CAB60280.2| 353|Caenorhabditis elegans Hypothetical
protein F15H10.8 protein.
Length = 353
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 232 SRFRNIVFYVDSFCYICRRIFVMPTLVIHNISF 134
S+F+ Y SF + C IFV+ LV + SF
Sbjct: 15 SKFKEFYRYRKSFLHYCAIIFVVIFLVFNLFSF 47
>Z71177-10|CAB60279.2| 353|Caenorhabditis elegans Hypothetical
protein F15H10.8 protein.
Length = 353
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 232 SRFRNIVFYVDSFCYICRRIFVMPTLVIHNISF 134
S+F+ Y SF + C IFV+ LV + SF
Sbjct: 15 SKFKEFYRYRKSFLHYCAIIFVVIFLVFNLFSF 47
>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical
protein C26H9A.2 protein.
Length = 1334
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 205 VDSFCYICRRIFVMPTLVIHNISF 134
+D+ C+I RR+F M I N SF
Sbjct: 513 LDALCFIIRRMFEMYEKNIQNASF 536
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 44 HSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVE 211
+S++N +Q+G TQ+ ++ +GV + N + + N+A T G V+
Sbjct: 112 NSSTNTTQPQQAGQTTQKARAASTTGVVGEGKKQNSNANASSSNAAAGATNGKAVD 167
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 44 HSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVE 211
+S++N +Q+G TQ+ ++ +GV + N + + N+A T G V+
Sbjct: 112 NSSTNTTQPQQAGQTTQKARAASTTGVVGEGKKQNSNANASSSNAAAGATNGKAVD 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,176,602
Number of Sequences: 27780
Number of extensions: 148163
Number of successful extensions: 483
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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