Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E02
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    31   0.027
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    31   0.027
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   0.57 
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    24   2.3  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    24   3.0  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    23   5.3  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    23   7.0  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    23   7.0  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    23   7.0  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    22   9.3  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    22   9.3  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    22   9.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    22   9.3  
SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    22   9.3  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 30.7 bits (66), Expect = 0.027
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 75  KQRHRA*QRSRYASLGTTEDVGLCFKTPREAVEGTYI 185
           KQ H      + A     +DVGL FKTP EA+ G Y+
Sbjct: 15  KQPHIFQNAKKGAGRRWYKDVGLGFKTPAEAIYGEYV 51


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 30.7 bits (66), Expect = 0.027
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 75  KQRHRA*QRSRYASLGTTEDVGLCFKTPREAVEGTYI 185
           KQ H      + A     +DVGL FKTP EA+ G Y+
Sbjct: 15  KQPHIFQNAKKGAGRRWYKDVGLGFKTPAEAIYGEYV 51


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 4   EGNMADQTERSFQRATELSSLNSASKGIARDSAAGTPL*VPQKMWAYASKRRARPLKAH 180
           E N+  + ++  Q+    SS +S +     DS A TP+ +P K     S  R   LK H
Sbjct: 90  ENNIVSEAKK--QKTLGSSSSSSDAVSSNNDSGASTPIPLPIKEPPLESNARNDKLKGH 146


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 4   EGNMADQTERSFQRATELSSLNSASKGIARDSAAGT-PL*VPQKMWAYASKRRARPLKAH 180
           EG+    T R FQ+ +   S+ S S  I  +   GT P+ V   ++    +   +P ++ 
Sbjct: 49  EGDEPQNTYRYFQQTSPGESVLSLSVSIKEEEKKGTNPIKVNNNVYDIPLQPPVKPGESR 108

Query: 181 TL 186
           TL
Sbjct: 109 TL 110


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 78  ACRVQRRQFGCSLE*TFCLIRHI 10
           AC    R FG S     C +RH+
Sbjct: 130 ACERANRDFGMSTNLIMCFLRHL 152


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 10  NMADQTERSFQRATELSSLNSASKGIARDS 99
           N   QT  SFQ   E ++L   SK   RDS
Sbjct: 538 NSTFQTSDSFQELDERTNLLDISKRKGRDS 567


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 70  SSKKTVRLLFGMNVLSDPP 14
           S +    LLFG N+L+ PP
Sbjct: 214 SHESLPHLLFGYNLLNSPP 232


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +1

Query: 7   GNMADQTERSFQRATELSSLNSASKGIARDSAAGTPL*VPQKMWAYASKRRARP 168
           GN+  + E  ++ A +++ +N    G A+ +AAG  +   +   +   K R +P
Sbjct: 22  GNLRVKGENFYRNAKDVARVNMYRGGKAKYNAAGELVRAAEFQSSEVPKARIQP 75


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 175 PSTASRGVLKHRPTSSVVPKEAYRLRCHARCLCLPS 68
           PST +  + K  P+   V   + RL  +   +CL S
Sbjct: 177 PSTTNAEIEKEEPSKKQVVPSSQRLADYKCVICLDS 212


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 108 YASLGTTEDVGLCFKTPREAVEGTY 182
           Y S    ED+ +C + PR  +E  Y
Sbjct: 224 YVSQNFKEDMEICHEKPRSKLEICY 248


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 166 ASRGVLKHRPTSSVVPKEAYRLRCHARCL 80
           ++ GVL  +P S  +  ++Y L  H R L
Sbjct: 62  SASGVLTSQPMSRDIKIDSYTLSFHGRLL 90


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 94  DSAAGTPL*VPQKMWAYASKRRARPLK 174
           DS AG+    P      + KRR RP K
Sbjct: 2   DSTAGSDASTPTNHTVSSKKRRGRPPK 28


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 181 YVPSTASRGVLKHRPTSSVV 122
           Y+  + SRG L  RP+S+++
Sbjct: 731 YIEDSPSRGSLPRRPSSALL 750


>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 124 PQKMWAYASKRRARPLKAHTL 186
           P+K   Y + RRA  +K HT+
Sbjct: 27  PKKGARYCAPRRAAAIKDHTI 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,547
Number of Sequences: 5004
Number of extensions: 12582
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)