Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E02
(187 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 36 0.005
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 36 0.005
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 36 0.006
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 36 0.006
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 36 0.006
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 36 0.006
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 1.2
02_05_0737 - 31328473-31330513,31331015-31331184 26 3.7
12_02_1132 + 26364166-26364303,26364532-26364588 26 4.9
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 26 4.9
04_04_1302 - 32482764-32483447,32483546-32484109 26 4.9
11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548... 25 6.5
09_04_0373 - 17037945-17040641 25 8.5
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646 25 8.5
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 129 EDVGLCFKTPREAVEGTYI 185
+++GL FKTPREA+EGTYI
Sbjct: 28 KNIGLGFKTPREAIEGTYI 46
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 129 EDVGLCFKTPREAVEGTYI 185
+++GL FKTPREA+EGTYI
Sbjct: 37 KNIGLGFKTPREAIEGTYI 55
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 129 EDVGLCFKTPREAVEGTYI 185
+ +GL FKTPREA+EGTYI
Sbjct: 37 KSIGLGFKTPREAIEGTYI 55
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 129 EDVGLCFKTPREAVEGTYI 185
+ +GL FKTPREA+EGTYI
Sbjct: 37 KSIGLGFKTPREAIEGTYI 55
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 129 EDVGLCFKTPREAVEGTYI 185
+ +GL FKTPREA+EGTYI
Sbjct: 37 KSIGLGFKTPREAIEGTYI 55
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 129 EDVGLCFKTPREAVEGTYI 185
+ +GL FKTPREA+EGTYI
Sbjct: 37 KSIGLGFKTPREAIEGTYI 55
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 7 GNMADQTERSFQRATELSSLNSASKGIARDSAAGTPL*VPQKMWAYASKRRARPLKAHT 183
G+ Q E S Q +T ++ IAR A + + P+K+ A + R R K T
Sbjct: 248 GDKVAQQESSTQESTVSPPVSECGDKIARQEGAASAIPTPEKVEATPRRPRKRSTKGLT 306
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 24 DRTFIPKSNRTVFFELG 74
DRT++P+S RT ELG
Sbjct: 124 DRTYVPQSRRTPVHELG 140
>12_02_1132 + 26364166-26364303,26364532-26364588
Length = 64
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 103 LRCHARCLCLPSSKKTVRLLFGMNV 29
LR H LC+P S T+ L + +NV
Sbjct: 35 LRRHGPKLCIPPSSLTILLEYSLNV 59
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 94 HARCLCLPSSKKTVRLLFGMNV 29
H +CLPSS+ RLL+ M++
Sbjct: 453 HQLHICLPSSRNKTRLLYRMSL 474
>04_04_1302 - 32482764-32483447,32483546-32484109
Length = 415
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 163 SRGVLKHRPTSSVVPKEAYRLRCHARCLCLPSSKKTVRLLFGMNVLS--DPP 14
+RG RP S+ V A C ARC + V L+F +V DPP
Sbjct: 227 ARGAPLRRPPSTFVAVVATAWTCFARCKTTAADDGEVFLVFIADVRERLDPP 278
>11_04_0291 -
15851647-15852252,15853995-15854136,15854666-15854881,
15854957-15855052,15855147-15855259,15856516-15856727,
15856842-15856939,15857066-15857186,15857291-15857508,
15857657-15857837,15857919-15858207,15858303-15858367,
15858480-15858591
Length = 822
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 6 GQYGGSDRTFIPKSNRTVFFELGK 77
G GGS + IP+ R VF+ GK
Sbjct: 766 GSGGGSSSSIIPRPCREVFWHTGK 789
>09_04_0373 - 17037945-17040641
Length = 898
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 139 PTSSVVPKEAYRLRCHARCLCL 74
PT++ V K A R C A C CL
Sbjct: 371 PTNTGVNKTACRALCTASCACL 392
>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
Length = 378
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 75 KQRHRA*QRSRYASLGTTEDVGLCFKTPREAVEG 176
+Q A RSR + TT+D G CF+ ++ G
Sbjct: 326 RQAAEAPARSRRSCSRTTQDSGFCFECSEDSRPG 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,696,915
Number of Sequences: 37544
Number of extensions: 93191
Number of successful extensions: 225
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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