Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E02
         (187 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC...    38   0.002
AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA...    38   0.002
AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB...    28   1.5  
AE014297-3720|ABC66189.2| 1519|Drosophila melanogaster CG34027-P...    28   2.0  
AY118697-1|AAM50557.1|  699|Drosophila melanogaster AT19081p pro...    27   3.5  
AF237722-1|AAF63744.1|  699|Drosophila melanogaster Ku80 protein.      27   3.5  
AE014134-2639|AAG22435.1|  699|Drosophila melanogaster CG18801-P...    27   3.5  
AY113343-1|AAM29348.1| 1307|Drosophila melanogaster GH12701p pro...    26   6.0  
AE014296-3443|AAF51654.2| 1307|Drosophila melanogaster CG32432-P...    26   6.0  

>AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC,
           isoform C protein.
          Length = 155

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 117 LGTTEDVGLCFKTPREAVEGTYI 185
           L  + DVGL FKTPREA++GTYI
Sbjct: 31  LRRSRDVGLGFKTPREAIDGTYI 53


>AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA,
           isoform A protein.
          Length = 155

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 117 LGTTEDVGLCFKTPREAVEGTYI 185
           L  + DVGL FKTPREA++GTYI
Sbjct: 31  LRRSRDVGLGFKTPREAIDGTYI 53


>AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB,
           isoform B protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 135 VGLCFKTPREAVEGTYI 185
           +GL F+ P EA++GTYI
Sbjct: 36  IGLGFRAPAEAIDGTYI 52


>AE014297-3720|ABC66189.2| 1519|Drosophila melanogaster CG34027-PA
            protein.
          Length = 1519

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 139  PTSSVVPKEAYRLRCHARCLCL 74
            P   VV K    ++CH+RC C+
Sbjct: 1111 PKVGVVAKRTMDIKCHSRCFCV 1132


>AY118697-1|AAM50557.1|  699|Drosophila melanogaster AT19081p
           protein.
          Length = 699

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 92  VTAQPVRLFRYHRRCGP 142
           +T+QP  +F + R+CGP
Sbjct: 167 ITSQPQAIFNFSRKCGP 183


>AF237722-1|AAF63744.1|  699|Drosophila melanogaster Ku80 protein.
          Length = 699

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 92  VTAQPVRLFRYHRRCGP 142
           +T+QP  +F + R+CGP
Sbjct: 167 ITSQPQAIFNFSRKCGP 183


>AE014134-2639|AAG22435.1|  699|Drosophila melanogaster CG18801-PA
           protein.
          Length = 699

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 92  VTAQPVRLFRYHRRCGP 142
           +T+QP  +F + R+CGP
Sbjct: 167 ITSQPQAIFNFSRKCGP 183


>AY113343-1|AAM29348.1| 1307|Drosophila melanogaster GH12701p
           protein.
          Length = 1307

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 131 FCGT*RGVPAALSRAMPLLAEF 66
           FCG  + VPAA+S    LL EF
Sbjct: 615 FCGGGQAVPAAVSSGPELLVEF 636


>AE014296-3443|AAF51654.2| 1307|Drosophila melanogaster CG32432-PA
           protein.
          Length = 1307

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 131 FCGT*RGVPAALSRAMPLLAEF 66
           FCG  + VPAA+S    LL EF
Sbjct: 615 FCGGGQAVPAAVSSGPELLVEF 636


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,169,093
Number of Sequences: 53049
Number of extensions: 147710
Number of successful extensions: 418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 24,988,368
effective HSP length: 42
effective length of database: 22,760,310
effective search space used: 432445890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)