Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E02
         (187 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...    33   0.020
Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U41279-22|AAK31431.1|  180|Caenorhabditis elegans Hypothetical p...    26   3.1  
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z35604-1|CAA84676.2|  744|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical...    25   7.1  
AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical...    25   7.1  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 132 DVGLCFKTPREAVEGTYI 185
           +VGL FK PR+AVEGTYI
Sbjct: 36  EVGLGFKAPRDAVEGTYI 53


>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -2

Query: 135 HLLWYLKRRTGCAVTRD---AFACRVQRRQFGCS 43
           H  W LK RT C  T D    F C V  R++  S
Sbjct: 316 HYHWLLKHRTKCLETTDEIQEFKCNVCYRRYNSS 349


>U41279-22|AAK31431.1|  180|Caenorhabditis elegans Hypothetical
           protein C17C3.15 protein.
          Length = 180

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  MADQTERSFQRATELSSLNSASKGIARDSAAG 108
           M D+T    QRA E SS NS ++ +  D AAG
Sbjct: 1   MGDET-MDLQRAPENSSSNSTTEPLDEDIAAG 31


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 172 STASRGVLKHRPTSSVVPKEAYRLRCHARCLCLPS 68
           S+ SR +  +  T S +P+EA+R+     C  +PS
Sbjct: 816 SSLSRIICDNTNTISTIPREAFRVGHMVPCSQIPS 850


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical protein
            F32A5.2a protein.
          Length = 1000

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 172  STASRGVLKHRPTSSVVPKEAYRLRCHARCLCLPS 68
            S+ SR +  +  T S +P+EA+R+     C  +PS
Sbjct: 957  SSLSRIICDNTNTISTIPREAFRVGHMVPCSQIPS 991


>Z35604-1|CAA84676.2|  744|Caenorhabditis elegans Hypothetical
           protein ZK1058.1 protein.
          Length = 744

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 108 YASLGTTEDVGLCFKTPREAVE 173
           +A LG   DVG  F+TP EA +
Sbjct: 629 FADLGFDVDVGPLFQTPLEAAQ 650


>AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16c protein.
          Length = 982

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 184 MYVPSTASR-GVLKHRPTSSVVPKEAYRLR 98
           M  PST+SR GVLK + T   +    YR+R
Sbjct: 344 MQEPSTSSRRGVLKRQHTIEPIDDVKYRVR 373


>AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16a protein.
          Length = 727

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 184 MYVPSTASR-GVLKHRPTSSVVPKEAYRLR 98
           M  PST+SR GVLK + T   +    YR+R
Sbjct: 89  MQEPSTSSRRGVLKRQHTIEPIDDVKYRVR 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,574,679
Number of Sequences: 27780
Number of extensions: 72073
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)