Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_E01
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    73   5e-15
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    73   5e-15
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   1.4  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   2.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   5.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    23   5.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   5.5  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    23   9.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    23   9.6  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 73.3 bits (172), Expect = 5e-15
 Identities = 36/50 (72%), Positives = 39/50 (78%)
 Frame = +3

Query: 51  NFSIFFVL*ITNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 200
           NF     L  TN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAG
Sbjct: 8   NFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAG 57



 Score = 32.7 bits (71), Expect = 0.009
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 29 VSLVIPDKFQHILRIMN 79
          +SLV+PD FQHILR++N
Sbjct: 1  MSLVVPDNFQHILRLLN 17


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 73.3 bits (172), Expect = 5e-15
 Identities = 36/50 (72%), Positives = 39/50 (78%)
 Frame = +3

Query: 51  NFSIFFVL*ITNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 200
           NF     L  TN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAG
Sbjct: 8   NFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAG 57



 Score = 32.7 bits (71), Expect = 0.009
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 29 VSLVIPDKFQHILRIMN 79
          +SLV+PD FQHILR++N
Sbjct: 1  MSLVVPDNFQHILRLLN 17


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 93  GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 185
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 265 FCIAWGLNMTVTISSTSYSVHSPAR 191
           F +AWG+ MT+T    SY+ +   R
Sbjct: 123 FIVAWGILMTLTCLVHSYASYIATR 147


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 148 YRRPTPLIAVIANITLRLPSMFVI 77
           +R P P +++I++I L   SMF I
Sbjct: 358 WRNPLPQLSIISHIILSPTSMFDI 381


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 180 LYPPFSTQCWNI 145
           L+P F TQ WNI
Sbjct: 179 LHPSFDTQLWNI 190


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 170  LFQHNVGISTSYSFNSSHSKHNFTLAINV 84
            +FQH + +  SYSF+ +     F   +NV
Sbjct: 3728 VFQHFISLKKSYSFSFNFIWSTFHQMLNV 3756


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 125 SSHSKHNFTLAINVRY 78
           SS SK NF L  +VRY
Sbjct: 62  SSQSKQNFVLERDVRY 77


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -3

Query: 229 ISST-SYSVHSPARLSRSIS 173
           IS T SY+ HSPA L+R+ S
Sbjct: 92  ISPTMSYTNHSPANLTRNSS 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,151
Number of Sequences: 5004
Number of extensions: 17737
Number of successful extensions: 44
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)