Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E01
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 71 1e-13
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 70 2e-13
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 67 2e-12
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 1.2
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322... 28 1.2
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280... 27 1.6
05_01_0010 - 66348-66629 26 4.8
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946... 26 4.8
11_06_0545 + 24839536-24843421,24843871-24844310 25 8.3
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 25 8.3
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028... 25 8.3
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 70.9 bits (166), Expect = 1e-13
Identities = 29/40 (72%), Positives = 38/40 (95%)
Frame = +3
Query: 81 TNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 200
TN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAG
Sbjct: 14 TNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAG 53
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 70.1 bits (164), Expect = 2e-13
Identities = 29/40 (72%), Positives = 38/40 (95%)
Frame = +3
Query: 81 TNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 200
TN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR+G
Sbjct: 18 TNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSG 57
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 29 VSLVIPDKFQHILRIMN 79
+SL+ + FQHILR++N
Sbjct: 1 MSLIAGEDFQHILRLLN 17
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 67.3 bits (157), Expect = 2e-12
Identities = 28/38 (73%), Positives = 36/38 (94%)
Frame = +3
Query: 81 TNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR 194
TN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 18 TNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKR 55
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 29 VSLVIPDKFQHILRIMN 79
+SL+ + FQHILR++N
Sbjct: 1 MSLIAGEDFQHILRLLN 17
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 151 EYRRPTPL-IAVIANITLRLPSMFVIHNTKNMLKFVWDHKRHCGN 20
EY P + + +A + L+ ++H+ K ++KF W+H + N
Sbjct: 1723 EYDEPLRIELLQLATLLLKYLQSDLVHHRKELIKFGWNHLKREDN 1767
>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
32233-33714
Length = 1189
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = -3
Query: 262 CIAWGLNMTVTISSTSYSVHSPARLSRSISAFFNTMLEYRRPTP 131
C+ W +N +T+++ +++ A + S++ ++ +L Y TP
Sbjct: 1036 CVVWAVNAQMTVTANYFTLVQHACIWGSVALWYVFLLAYGAITP 1079
>08_01_0317 -
2807275-2807487,2807573-2807737,2807818-2807987,
2808256-2808724,2810581-2810727,2810968-2810976,
2811054-2811890
Length = 669
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 226 SSTSYSVHSPARLS--RSISAFFNTMLEYRRPTPLIAV 119
SST + A+ S +S F + +L YRRP PL A+
Sbjct: 403 SSTKWLKADAAKFSSMKSFKKFVDNLLPYRRPVPLDAL 440
>05_01_0010 - 66348-66629
Length = 93
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 90 DGKR--KVMFAMTAIKGVGRRYSNIVLKKADIDLDKR 194
+GKR K+ + A+K + + + V KKA IDL+K+
Sbjct: 57 EGKRFVKLRLSTKALKTIEKHGLDAVAKKAGIDLNKK 93
>01_06_1567 +
38293612-38293795,38294467-38294523,38294609-38294699,
38294799-38294959,38295045-38295172,38295291-38295428,
38295717-38295809,38298219-38298324,38298393-38298517
Length = 360
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = -3
Query: 238 TVTISSTSYSVHSPARLSRSISAFFNTMLEYRRPTPLIAVIANITLRLPSMFVIHNTKNM 59
T +S Y++ + + S+ F + + + PT ++ + L F++H TK+M
Sbjct: 260 TAVVSPIYYTMFTSLTILASVIMFKDW--DRQNPTQIVTEMCGFVTILSGTFLLHKTKDM 317
Query: 58 L 56
+
Sbjct: 318 V 318
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 118 IANITLRLPSMFVIHNTKNMLKFVWD 41
+ N+ L L + N +NM+KF +D
Sbjct: 704 LENLLLSLNEFSTVSNARNMIKFCYD 729
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 202 SPARLSRSISAFFNTMLEYRRPTPLIAVIANITLRLPSMFVIHNTKNMLKFVWDHKRHCG 23
SP L S +A YRR +P + A+ RLPS + + + H
Sbjct: 27 SPTPLDLSSAAAAAAAASYRRLSPSLRPPAHPQARLPSPYPQIPSSSSAAAAGSSGHHAR 86
Query: 22 NLNSPL 5
+L+ PL
Sbjct: 87 SLSQPL 92
>07_03_0740 -
21102015-21102287,21102402-21102555,21102647-21102884,
21103008-21103218,21103303-21103442,21103537-21103665,
21104120-21104960
Length = 661
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 149 ISTSYSFNSSHSKHNFTLAINVRYS*YEEYAEICLGSQETLWQFEFTP 6
+S S + K+ L +R+ + +CL E L +EF P
Sbjct: 384 LSKSSTQGVQELKNELALVAKLRHKNLVSFVGVCLDQHERLLVYEFVP 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,499,477
Number of Sequences: 37544
Number of extensions: 102317
Number of successful extensions: 234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -