Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_E01
(267 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 61 9e-11
Z70780-8|CAA94825.2| 266|Caenorhabditis elegans Hypothetical pr... 29 0.60
AC006625-6|AAN84837.1| 252|Caenorhabditis elegans Acyl coa dehy... 27 1.4
AC006625-5|AAK68275.1| 427|Caenorhabditis elegans Acyl coa dehy... 27 1.4
Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 25 7.4
U88309-1|AAB42331.3| 395|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical pr... 25 9.7
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 61.3 bits (142), Expect = 9e-11
Identities = 26/40 (65%), Positives = 35/40 (87%)
Frame = +3
Query: 81 TNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 200
TNIDG RKV +A+TAIKGVGRR++ + +KAD+D++KRAG
Sbjct: 18 TNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAG 57
Score = 31.9 bits (69), Expect = 0.064
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 29 VSLVIPDKFQHILRIMN 79
+SL+IP+KFQHI R+MN
Sbjct: 1 MSLIIPEKFQHIHRVMN 17
>Z70780-8|CAA94825.2| 266|Caenorhabditis elegans Hypothetical
protein F46B6.9 protein.
Length = 266
Score = 28.7 bits (61), Expect = 0.60
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 184 RSISAFFNTMLEYRRPTPLIAVIANIT--LRLPSMFVIHNTKNMLKFVWDH 38
R +SAFF + + PT ++ VI+ + L + S H N + FV +H
Sbjct: 2 RILSAFFAVLFTFINPTMIVNVISQVEAFLNMNSQLPDHLRFNAIDFVVNH 52
>AC006625-6|AAN84837.1| 252|Caenorhabditis elegans Acyl coa
dehydrogenase protein1, isoform b protein.
Length = 252
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3
Query: 208 VHSPARLSRSISAFFNTML---EYRRPTPLIAVIANITLRLP-SMFVIHNTKNM-LKFV 47
VH P S S+FFN M+ E + P ++ + I LP SM + + T+ LK++
Sbjct: 3 VHVPEEYGGSGSSFFNAMIVIEELAKTDPSVSAMVGIHNTLPVSMIIDYGTEEQKLKYL 61
>AC006625-5|AAK68275.1| 427|Caenorhabditis elegans Acyl coa
dehydrogenase protein1, isoform a protein.
Length = 427
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3
Query: 208 VHSPARLSRSISAFFNTML---EYRRPTPLIAVIANITLRLP-SMFVIHNTKNM-LKFV 47
VH P S S+FFN M+ E + P ++ + I LP SM + + T+ LK++
Sbjct: 96 VHVPEEYGGSGSSFFNAMIVIEELAKTDPSVSAMVGIHNTLPVSMIIDYGTEEQKLKYL 154
>Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical
protein LLC1.3 protein.
Length = 495
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 90 DGKRKVMFAMTAIKGVGRR-YS-NIVLKKADIDLDKR 194
DGK++ + T + VGRR Y+ + L IDLD R
Sbjct: 283 DGKKQTLECDTLLVSVGRRPYTEGLGLSNVQIDLDNR 319
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 241 MTVTISSTSYSVHSPARLSRSISAFFNTMLEYRRPTPLIAVIANITLRLPSMFVIHNTKN 62
M TISST+ + SPA +I+A F+ R P+ + + +P + HN N
Sbjct: 628 MAATISSTAKNTPSPAGSVTTINATFSKP-SSRHPSEEVYRSPSQPTNVPWASLWHNVNN 686
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 241 MTVTISSTSYSVHSPARLSRSISAFFNTMLEYRRPTPLIAVIANITLRLPSMFVIHNTKN 62
M TISST+ + SPA +I+A F+ R P+ + + +P + HN N
Sbjct: 628 MAATISSTAKNTPSPAGSVTTINATFSKP-SSRHPSEEVYRSPSQPTNVPWASLWHNVNN 686
>U88309-1|AAB42331.3| 395|Caenorhabditis elegans Hypothetical
protein T23B3.4 protein.
Length = 395
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 250 GLNMTVTISSTSYSVHSPARLSRSISAFFNTMLEYRRPTP 131
GLN ++TI + S+ +P +F +++L Y RP P
Sbjct: 318 GLNSSLTIMTYISSLANPITYCFMNKSFRSSVLAYCRPKP 357
>Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical
protein T22H2.2 protein.
Length = 527
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 16 SNCHSVSCDPRQISAY 63
SN HS CDP I AY
Sbjct: 209 SNTHSERCDPTTIIAY 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,786,597
Number of Sequences: 27780
Number of extensions: 98491
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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