Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D24
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 60 2e-10
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 28 0.87
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 26 3.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 4.7
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 4.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 6.2
SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz... 25 8.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.1
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.1
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 60.5 bits (140), Expect = 2e-10
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Frame = +3
Query: 114 GYADKMMPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKA-AGTRESPTLVPSCFDARI 290
G D +P LE ATGLER EL++ +G D F+MK L + GT P +V S R
Sbjct: 59 GGRDGEVPTDLEQATGLERYELLSELSGR-DAFDMKPLDASRKGTLTDPIMVTSLDPYRH 117
Query: 291 VGCICEEHAT-AVTWLWLHKDHPRRC-ECGHWYKL 389
+GC + + W+ ++KD RRC ECG YKL
Sbjct: 118 IGCTGSPSGSHNLIWMTVYKDKLRRCPECGSVYKL 152
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 28.3 bits (60), Expect = 0.87
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 263 EGGAFTSSSSLLQHFHVEGIIIASLHSHKFPSFQASSV 150
+ GA + S LL+ +++ SLH++ F ASSV
Sbjct: 878 DDGAISRSILLLEQISENSVVVNSLHNYFFAEAHASSV 915
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = -1
Query: 349 SLCNQSQVTAVACSSHMHPTIRASKQDGTRVGLSRVP--AAFF-STFMLKGSSLPACIAI 179
+L + S ++ SS H + +S + + S P +AF+ ++ + SS + ++
Sbjct: 382 TLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSL 441
Query: 178 SSLLSKPVACSRGSGIILSA 119
SSL SKP+ + S ++ S+
Sbjct: 442 SSLSSKPILTASSSSLLTSS 461
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 364 QRRGWSLCNQSQVTAVACSSHMHPTIRASKQDGTRV 257
QR W+ Q +H T+RA+KQ G RV
Sbjct: 182 QRNNWNRVVAFQTRNPMHRAHRELTVRAAKQHGARV 217
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 267 ARGWGFHEFQQPSSALSC 214
+RG GFH QPS L C
Sbjct: 1750 SRGLGFHALSQPSRELIC 1767
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 409 YTNCFSTNLYQCPHSQRRGWSLCNQSQVTAVACSSHMHPTIRAS 278
+T S LY P QR G SQ AVAC+S + I A+
Sbjct: 530 FTAFNSPTLYTKPFHQRDGPKPTGASQWAAVACTSVVSCIIMAA 573
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 194 SLHSHKFPSFQASSVFQGVRHHFISI 117
S H+ F + SVF+ +HH SI
Sbjct: 1590 SFRPHEISRFNSQSVFKSKKHHLKSI 1615
>SPAC1610.02c |||mitochondrial ribosomal protein subunit
L1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 66 YKVNAFRSVLLPIARRGYADKMMPDPLE 149
Y+ N S+ LP+ + G++DK + + +E
Sbjct: 187 YRQNDAGSINLPVGKLGFSDKELQENIE 214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.1
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = -3
Query: 332 PSDSCSVFFTYASDNTRIKTRRHEGGAFTSSS-SLLQHFHVEGIIIASLHSHKFPSFQAS 156
P++S V S T IKT G+ +SSS + ++S S SF S
Sbjct: 716 PNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPS 775
Query: 155 SVFQGVRHHFISITPS 108
S + F+ T S
Sbjct: 776 SAISTAKSSFVLSTLS 791
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -3
Query: 236 SLLQHFHVEGIIIASLHSHKFPSFQASSVFQGVRHHFISIT 114
++ HFH+EG I +++S+ P+ +S+ Q ++ SIT
Sbjct: 580 AIQSHFHLEGPIRYNMNSNCTPN-SIASIIQKKSYNVSSIT 619
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,292
Number of Sequences: 5004
Number of extensions: 54031
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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