Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D24
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0682 + 24251861-24251911,24252036-24252086,24255244-242553...    56   2e-08
06_01_0311 - 2243117-2243185,2243321-2243400,2243554-2243620,224...    54   1e-07
10_01_0018 + 222570-222675,223317-223495,223496-223591                 29   2.7  
01_06_1753 - 39664219-39665445                                         29   2.7  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    28   6.3  
11_01_0609 - 4865229-4865510,4865981-4866144,4866219-4866320,486...    27   8.3  

>01_05_0682 +
           24251861-24251911,24252036-24252086,24255244-24255310,
           24255405-24255484,24255631-24255696
          Length = 104

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +3

Query: 153 ATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEEHATA--V 326
           ATGLER EL A   G +  F+M       GT+E+P ++ S ++ RIVGC   E      V
Sbjct: 4   ATGLEREELAAELKG-EKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEGEDEHDV 62

Query: 327 TWLWLHKDHPRRCE-CGHWYKL 389
            W WL KD P  C  C  ++ L
Sbjct: 63  VWFWLKKDEPHECPVCSQYFVL 84


>06_01_0311 -
           2243117-2243185,2243321-2243400,2243554-2243620,
           2245176-2245226,2245317-2245402,2245501-2245612
          Length = 154

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +3

Query: 138 DPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEEHA 317
           D +  ATGLER E+ A   G    F+M       GT+E+P ++ S ++ RIVGC   E  
Sbjct: 48  DVMPIATGLEREEIAAELQGKKR-FDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGE 106

Query: 318 TA--VTWLWLHKDHPRRCE-CGHWYKL 389
               V W WL K  P  C  C  ++ L
Sbjct: 107 DEHDVVWFWLEKGKPHECPVCTQYFSL 133


>10_01_0018 + 222570-222675,223317-223495,223496-223591
          Length = 126

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 268 GTRVGLSRVPAAFF--STFMLKGSSLPACIAISSLLSKP 158
           G  VG  RV A+ F  +T  L G++ P CI   SLL  P
Sbjct: 51  GMAVGRLRVKASLFGSTTATLAGAAFPWCIVAESLLLPP 89


>01_06_1753 - 39664219-39665445
          Length = 408

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 260 GGAFTSSSSLLQHFHVEGIIIASLHSHKFPSFQASSVFQGVRHHFISITPSRNG 99
           GGA    ++  QH  +EG+       + +   QA +V  G +HH+   T +  G
Sbjct: 217 GGAVKQHATYKQHQAIEGVNGCGAGGYNYNRHQAVAVAGGGQHHYGGATAAAYG 270


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = -1

Query: 220 FMLKGSSLPACIAIS-SLLSKPVACSR--GSGIILSA*P-RLAMGSKTLLNAFTL*ICLH 53
           F+L+  S PA  A+   L+    AC+    +  +L A P R  +    LL   T    LH
Sbjct: 43  FLLRLPSHPASAAVRVKLIQAYAACAALPAARAVLDASPDRTTVFFNVLLRGLTA-ASLH 101

Query: 52  NDAILLYFHTRP 17
            DA+LL+   RP
Sbjct: 102 RDALLLFASMRP 113


>11_01_0609 -
           4865229-4865510,4865981-4866144,4866219-4866320,
           4866674-4867217
          Length = 363

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 353 VVLM*PEPSDSCSVFFTYASDNTRIKTRRHEGGAFTSS 240
           V +  P   D  S F  + S N  IKT   EGG  T++
Sbjct: 74  VTVFEPSGIDKISTFSAHPSKNVIIKTESDEGGMVTAA 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,389
Number of Sequences: 37544
Number of extensions: 365987
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)