Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D24
(586 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR541753-1|CAG46553.1| 129|Homo sapiens COX5B protein. 101 1e-21
M59250-1|AAA52060.1| 129|Homo sapiens COX5B protein. 99 6e-21
M19961-1|AAA52061.1| 129|Homo sapiens COX5B protein. 99 6e-21
BT006742-1|AAP35388.1| 129|Homo sapiens cytochrome c oxidase su... 99 6e-21
BC006229-1|AAH06229.1| 129|Homo sapiens cytochrome c oxidase su... 99 6e-21
AC017099-1|AAY24279.1| 129|Homo sapiens unknown protein. 99 6e-21
CR541727-1|CAG46528.1| 129|Homo sapiens COX5B protein. 99 1e-20
>CR541753-1|CAG46553.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 101 bits (243), Expect = 1e-21
Identities = 50/91 (54%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 132 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 311
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS D RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISDKRIVGCICEE 95
Query: 312 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 401
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQ 126
>M59250-1|AAA52060.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 99 bits (238), Expect = 6e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 132 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 311
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 312 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 401
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGQAQRCPRCGAHYKLVPQQ 126
>M19961-1|AAA52061.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 99 bits (238), Expect = 6e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 132 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 311
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 312 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 401
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGQAQRCPRCGAHYKLVPQQ 126
>BT006742-1|AAP35388.1| 129|Homo sapiens cytochrome c oxidase
subunit Vb protein.
Length = 129
Score = 99 bits (238), Expect = 6e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 132 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 311
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 312 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 401
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQ 126
>BC006229-1|AAH06229.1| 129|Homo sapiens cytochrome c oxidase
subunit Vb protein.
Length = 129
Score = 99 bits (238), Expect = 6e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 132 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 311
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 312 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 401
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQ 126
>AC017099-1|AAY24279.1| 129|Homo sapiens unknown protein.
Length = 129
Score = 99 bits (238), Expect = 6e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 132 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 311
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 312 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 401
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQ 126
>CR541727-1|CAG46528.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 99.1 bits (236), Expect = 1e-20
Identities = 49/91 (53%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +3
Query: 132 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 311
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 312 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 401
T+V W WLHK +RC CG YKLV Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPHQ 126
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,928,069
Number of Sequences: 237096
Number of extensions: 2036920
Number of successful extensions: 3587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3578
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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