Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D23
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1010 + 33802947-33803473,33804096-33804273 34 0.070
02_03_0131 - 15576422-15577021 32 0.28
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 30 1.1
10_08_0520 - 18495118-18498237 30 1.5
09_04_0445 - 17677126-17677512,17677608-17678564 30 1.5
01_01_1127 + 8930593-8932681,8932812-8933401 30 1.5
02_01_0305 + 2041370-2043114,2043764-2044121 29 2.0
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 29 2.0
03_06_0199 + 32310272-32311432 28 4.6
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076... 28 4.6
01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333... 28 4.6
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 28 6.1
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445... 28 6.1
01_02_0134 + 11470543-11470608,11471718-11471775,11472025-114722... 28 6.1
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 27 8.0
08_01_0445 + 3942820-3943030,3943719-3943853,3943942-3944150,394... 27 8.0
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 27 8.0
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 8.0
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 27 8.0
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 27 8.0
>01_06_1010 + 33802947-33803473,33804096-33804273
Length = 234
Score = 34.3 bits (75), Expect = 0.070
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 344 PRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSK-NTKQA 520
P + +++ T+ + +++ PS P RW S P A A +TSSA SK A
Sbjct: 67 PATMSAAPTSAQKAKAKAKKEVPSAPRVSSRWPSSLPRAVSAGAAGRTSSASSKLREASA 126
Query: 521 STRTNHISRNWNAS 562
S + +W+ S
Sbjct: 127 SASASFSFSHWSRS 140
>02_03_0131 - 15576422-15577021
Length = 199
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 393 RGEGKRRRTLDREADG--RRHSHRHGSAGLFGRPAPQTQRIRSRR 521
RGE R+R+ AD RRHSH H G P+P R + RR
Sbjct: 57 RGERDRKRSRSPSADRSHRRHSHSHSHRGR-SSPSPDAGRHKRRR 100
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 112 EEISGLMDAHARFKATLGEADKEYQAIVNLVHQVEAIVKQHQIP-GGLENPYTTLTAHEL 288
+E++ +A ++L +++YQ + + ++ EA ++ LE Y+ T +L
Sbjct: 270 QEVNAKEEAIRELSSSLSSKEEDYQKLQLIYNETEASLEYADSKIEQLEEGYSA-TKDDL 328
Query: 289 NRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANA 411
N K + L + A+ ++ L++Q+A+ A A
Sbjct: 329 NSKMCSIDSLNKEVQTLYTAQTGAEEKISELKKQYADLAAA 369
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = +1
Query: 280 HELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIG 459
+ L K VP D L ++Q++ +L + PW + + +TA+G
Sbjct: 276 YSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAGGTETPWAQTPVTDLTAVG 335
Query: 460 MGLQGSLEDQLRRLKEYEAGVYAYKP 537
G L +L RL + +G+ P
Sbjct: 336 EGRGTVLSLKLDRLSDSVSGLTVVDP 361
>09_04_0445 - 17677126-17677512,17677608-17678564
Length = 447
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +1
Query: 217 AIVKQHQIPGGLE-NP---YTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLR 384
A+ + +PGG E P Y + TA++ + W + L+P + R + +L
Sbjct: 126 ALAWRDALPGGAELRPGLAYVSETAYDHSNLWHGISALIPFASWHARSGCRARPARWALF 185
Query: 385 RQFAEKANAVGPWIERQMDAVTAIGM 462
E + PW+ +A T +GM
Sbjct: 186 HH-GEVRLGMSPWLTSLAEATTGVGM 210
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 319 VPQRDGTLAAELRKQQNNESLR--RQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQL 492
VP D TL + R++Q + + + A A A PW + + +TA+G G L +L
Sbjct: 193 VPVPD-TLLEKARQEQGHVTALDPKSRAAAAGAETPWAQTPVTDLTAVGEGRGTVLSLKL 251
Query: 493 RRLKEYEAGVYAYKP 537
RL + +GV P
Sbjct: 252 DRLSDSVSGVTIVDP 266
>02_01_0305 + 2041370-2043114,2043764-2044121
Length = 700
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +2
Query: 389 SSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSKNTKQASTRTNHISRNW 553
S+ R+QTPS P S PSQP+A + + +T+S+ S+ K AS+ +I ++
Sbjct: 377 STSRQQTPS-PTSLPAAIPSQPAAAISSSSSETNSS-SEQEKGASSSACYIDESF 429
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 194 TIAWYSLSASPRVALNRACASISPDISSMVCTMNMSTRSSRVPSSQL 54
T++ SL A R + A S ++ +CT+N T S+VP+ +L
Sbjct: 472 TLSGDSLRARKRRGASVLYALTSEELKDHLCTLNHDTSQSKVPTEEL 518
>03_06_0199 + 32310272-32311432
Length = 386
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 381 EASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGR 485
EAS G R + + R + RRH G+A L GR
Sbjct: 83 EASPPARGARPQPVHRRREARRHDALRGAAALRGR 117
>03_05_1154 +
30803983-30806047,30806152-30806968,30807362-30807655,
30808214-30808451
Length = 1137
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 418 PWIERQMDAVTAIGMGLQGSLEDQ 489
PW + +MDA+ ++ + L+GSL+D+
Sbjct: 566 PWEDVEMDAIHSLQLILRGSLQDE 589
>01_07_0226 +
42130300-42131430,42131530-42131715,42133244-42133345,
42133425-42133481,42133563-42133658,42133736-42133828,
42133945-42134064,42134155-42134187,42134266-42134316,
42135129-42135191
Length = 643
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 366 EQREPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTQRIRSRR 521
++ +P G G+ +E+DG+R HR S G RP Q +R + ++
Sbjct: 19 QEPDPACGASGSGQDAPADQQESDGKRGQHR--SPGDEARPDRQLKRRKKKK 68
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 438 GRRHSHRHGSAGLFGRPAPQTQRIRS 515
GR H H HG G G PA + Q ++S
Sbjct: 16 GRGHGHGHGHGGGGGGPAARKQPLQS 41
>04_04_0416 +
25042937-25043350,25044038-25044238,25044343-25044525,
25044975-25045084,25045317-25045376,25045620-25045911,
25046780-25046967,25047275-25048149,25048846-25049805,
25050025-25050068,25050860-25050925,25051176-25051364
Length = 1193
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 568 LGGCVPVPRYVVCTRRRLLRIL*VCGAGLPKSP 470
LGGCVP P + R++L ++ +C LP SP
Sbjct: 75 LGGCVPSPWEDFQSSRKVLAVVGIC--HLPSSP 105
>01_02_0134 +
11470543-11470608,11471718-11471775,11472025-11472278,
11472307-11472511,11472907-11473142
Length = 272
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 226 KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRD 333
K+H++P G E P T+ ++ K DV Q+VP+ +
Sbjct: 85 KEHELPKGTEGPSTSAIVLIVSEKELDV-QVVPENE 119
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 27.5 bits (58), Expect = 8.0
Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Frame = +1
Query: 106 TIEEISGLMDAHARFKATLGEADKEYQAIVNLVH---QVEAIVKQHQIPGGLE---NPYT 267
T+E+++ +DA + K +A ++ + + +EA+ K + L+ Y
Sbjct: 166 TVEDLTNKLDAINKSKELAIQATEDAKTRTKQLEGGDSLEAVGKDGPLKQELDVAREQYV 225
Query: 268 TLTAHELNRKWSDVRQLVPQRDGTLAAELRK-QQNNESLR--RQFAEKANAVGPWIERQM 438
A +L+ ++R+L + +L L QQ ESL +KA+ + I
Sbjct: 226 VALA-DLDAAKQELRKLKKDFEASLDMRLAAAQQEEESLHLAETNKQKADQLRKEIATIQ 284
Query: 439 DAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELER 558
+++T + + + E++ + L E + YK +EE E+
Sbjct: 285 ESLTHVKAATEQAHEEEAQILAEKDVTRKTYKQALEEAEK 324
>08_01_0445 +
3942820-3943030,3943719-3943853,3943942-3944150,
3944258-3944464
Length = 253
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 555 FQFLDMWFVRVDACFVFF 502
F + +WFVR+DAC+ +F
Sbjct: 146 FPDIRLWFVRLDACYPWF 163
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 378 PEASVRGEGKRRRTLDREADGRRHSHRHGSAG 473
P ++VRG+GKR T ++G R SAG
Sbjct: 270 PASAVRGKGKRAATSTAASEGCSKKSRGNSAG 301
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 418 PWIERQMDAVTAIGMGLQGSLEDQLR 495
PW + +MDA+ ++ + L+G+L D ++
Sbjct: 570 PWNDYEMDAIHSLQLILRGTLNDDIK 595
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 350 SCASSR--TTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSKNTKQAS 523
+ A SR T +A SS R+TP+ + + S+PS W TSS + +S
Sbjct: 14 AAAGSRPLTPKAFSASSSARRTPAAAAAGKENSASKPSKPTAAVRWSTSSIPRASRIPSS 73
Query: 524 TRTNHISRNWNAST 565
++ + AS+
Sbjct: 74 VESSKLVSTLRASS 87
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +1
Query: 25 RVCQTRRTFHNWLDGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLV 204
R+ T L+ E + D F++ + S LM H + + + + I+ L
Sbjct: 525 RIGTPAMTTRGCLEDDFEVIAD-FLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELR 583
Query: 205 HQVEAIVKQHQIPG 246
+QVE Q +PG
Sbjct: 584 NQVENFASQFAMPG 597
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,417
Number of Sequences: 37544
Number of extensions: 366060
Number of successful extensions: 1407
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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