Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D23
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 204 3e-53
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 204 3e-53
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 94 6e-20
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 36 0.020
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 36 0.020
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 36 0.020
AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical ... 30 1.0
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 29 2.3
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 29 2.3
AF025463-1|AAB71008.3| 871|Caenorhabditis elegans Hypothetical ... 29 2.3
L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical pr... 29 3.1
L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical pr... 29 3.1
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 29 3.1
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 3.1
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 28 4.1
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical p... 27 7.2
U21321-5|AAL11111.1| 553|Caenorhabditis elegans Hypothetical pr... 27 7.2
U21321-4|AAG00049.1| 587|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 27 7.2
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 27 7.2
AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 27 7.2
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical protein
W04D2.1b protein.
Length = 894
Score = 204 bits (498), Expect = 3e-53
Identities = 91/174 (52%), Positives = 129/174 (74%), Gaps = 1/174 (0%)
Frame = +1
Query: 49 FHNWLDGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLVHQVEAIVK 228
F+NWLDG REDL D+ IVH + EI L++AH +FK+TLG+AD+E+ +I + H+VE +V
Sbjct: 526 FNNWLDGAREDLADLVIVHEMREIEELVNAHDQFKSTLGDADREFSSINQIEHEVEHLVT 585
Query: 229 QHQIPGGL-ENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKA 405
H + L NPYT L+A ++ RKW +V+ VP+RD L AEL++QQNNE LR FAEKA
Sbjct: 586 SHGLDRELLRNPYTDLSASDIRRKWGEVQNSVPRRDSQLQAELKRQQNNERLRTIFAEKA 645
Query: 406 NAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELERIHQ 567
N VGPW+ER+++ V AIG+G +G LED +++L+ + V YKP+++ELER+HQ
Sbjct: 646 NQVGPWLERELEQVLAIGLGGRGRLEDAIQQLRSIQRNVLGYKPNLDELERVHQ 699
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 11 DLLHLEFAKRAAPFTTGWMEPAR 79
D L+L+FAKRAAPF W++ AR
Sbjct: 513 DSLYLDFAKRAAPF-NNWLDGAR 534
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical protein
W04D2.1a protein.
Length = 920
Score = 204 bits (498), Expect = 3e-53
Identities = 91/174 (52%), Positives = 129/174 (74%), Gaps = 1/174 (0%)
Frame = +1
Query: 49 FHNWLDGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLVHQVEAIVK 228
F+NWLDG REDL D+ IVH + EI L++AH +FK+TLG+AD+E+ +I + H+VE +V
Sbjct: 552 FNNWLDGAREDLADLVIVHEMREIEELVNAHDQFKSTLGDADREFSSINQIEHEVEHLVT 611
Query: 229 QHQIPGGL-ENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKA 405
H + L NPYT L+A ++ RKW +V+ VP+RD L AEL++QQNNE LR FAEKA
Sbjct: 612 SHGLDRELLRNPYTDLSASDIRRKWGEVQNSVPRRDSQLQAELKRQQNNERLRTIFAEKA 671
Query: 406 NAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELERIHQ 567
N VGPW+ER+++ V AIG+G +G LED +++L+ + V YKP+++ELER+HQ
Sbjct: 672 NQVGPWLERELEQVLAIGLGGRGRLEDAIQQLRSIQRNVLGYKPNLDELERVHQ 725
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 11 DLLHLEFAKRAAPFTTGWMEPAR 79
D L+L+FAKRAAPF W++ AR
Sbjct: 539 DSLYLDFAKRAAPF-NNWLDGAR 560
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 94.3 bits (224), Expect = 6e-20
Identities = 50/170 (29%), Positives = 94/170 (55%)
Frame = +1
Query: 46 TFHNWLDGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLVHQVEAIV 225
TF++W + EDL D +++EEI L DAH F+ +L A+++++ + +L ++++
Sbjct: 2062 TFNSWFENAEEDLTDPVRCNSLEEIRALRDAHGEFQRSLSSAEEDFRQLQDLDRRIKSF- 2120
Query: 226 KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKA 405
+ P NPYT T L W ++++++ +R+ LA E ++Q+ N+ LRR+FA+ A
Sbjct: 2121 --NVGP----NPYTWFTMDALEDTWRNLQRIIKEREQELAREHQRQEENDKLRREFAKLA 2174
Query: 406 NAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELE 555
NA W+ + G G+LE+QL ++ + A K + ++E
Sbjct: 2175 NAFHAWLTNTRQEMMEAG----GTLEEQLDAVERKAKEIKANKGQLRQIE 2220
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 35.9 bits (79), Expect = 0.020
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +1
Query: 118 ISGLMDAHARFKA-TLGEADKEYQAIVNLVHQVEAI-VKQHQIPGGLENPYTTLTAHELN 291
++G+ + HA+F E +Y+ L I K+ + P L H++
Sbjct: 332 LNGMREEHAKFNQFRTSEKPPKYKEKGELEALFFTIQTKRKAMSRKQYQPPQGLFMHDIE 391
Query: 292 RKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQ 471
W+ + +R + AEL++Q+ E L ++F +KA W+ + + G
Sbjct: 392 SAWAQLDYAENERQVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRS 451
Query: 472 GS-LEDQLRRLKEYEAGVYAYKPHIEEL 552
S +E L++ + + A + + L
Sbjct: 452 ASQVEKTLKKQQAISTDILAREDRFKML 479
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 35.9 bits (79), Expect = 0.020
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +1
Query: 118 ISGLMDAHARFKA-TLGEADKEYQAIVNLVHQVEAI-VKQHQIPGGLENPYTTLTAHELN 291
++G+ + HA+F E +Y+ L I K+ + P L H++
Sbjct: 332 LNGMREEHAKFNQFRTSEKPPKYKEKGELEALFFTIQTKRKAMSRKQYQPPQGLFMHDIE 391
Query: 292 RKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQ 471
W+ + +R + AEL++Q+ E L ++F +KA W+ + + G
Sbjct: 392 SAWAQLDYAENERQVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRS 451
Query: 472 GS-LEDQLRRLKEYEAGVYAYKPHIEEL 552
S +E L++ + + A + + L
Sbjct: 452 ASQVEKTLKKQQAISTDILAREDRFKML 479
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 35.9 bits (79), Expect = 0.020
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +1
Query: 118 ISGLMDAHARFKA-TLGEADKEYQAIVNLVHQVEAI-VKQHQIPGGLENPYTTLTAHELN 291
++G+ + HA+F E +Y+ L I K+ + P L H++
Sbjct: 332 LNGMREEHAKFNQFRTSEKPPKYKEKGELEALFFTIQTKRKAMSRKQYQPPQGLFMHDIE 391
Query: 292 RKWSDVRQLVPQRDGTLAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQ 471
W+ + +R + AEL++Q+ E L ++F +KA W+ + + G
Sbjct: 392 SAWAQLDYAENERQVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRS 451
Query: 472 GS-LEDQLRRLKEYEAGVYAYKPHIEEL 552
S +E L++ + + A + + L
Sbjct: 452 ASQVEKTLKKQQAISTDILAREDRFKML 479
>AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical
protein F58D5.6 protein.
Length = 787
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 184 QAIVNLVHQVEAIVKQHQI--PGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELR 357
Q I N + + I + +I PGG+E ELNR V +LV Q + T AA+L+
Sbjct: 109 QEIENALRFLVEIKQYREILKPGGIEEKSAGKIRDELNRLHDAVYRLVEQSNPTYAAQLK 168
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 423 DREADGRRHSHRHGSAGLFGRPAPQTQRIRSRRLRVQTTYRGTGTHPP 566
D E+ R+ H G L +Q + R+ Q Y GTG H P
Sbjct: 1175 DIESPTPRYHHLQGQGTLTRSYHQSSQSLEGRQRTPQVVYTGTGRHQP 1222
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 423 DREADGRRHSHRHGSAGLFGRPAPQTQRIRSRRLRVQTTYRGTGTHPP 566
D E+ R+ H G L +Q + R+ Q Y GTG H P
Sbjct: 1175 DIESPTPRYHHLQGQGTLTRSYHQSSQSLEGRQRTPQVVYTGTGRHQP 1222
>AF025463-1|AAB71008.3| 871|Caenorhabditis elegans Hypothetical
protein K10B4.3 protein.
Length = 871
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 13 LTASRVCQTRRTFHNWLDGTREDLVDMFIVHTIEEISGLM-DAHARF 150
+T S++C W++ R D+V F+ H +I + + +ARF
Sbjct: 554 ITTSKMCALNEEDEKWINNDRNDVVYKFVEHRKNKIRRYIGEVNARF 600
>L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical
protein F42H10.7b protein.
Length = 531
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 335 ARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQP 454
+ W R +S R+T SR TP S+G TP P
Sbjct: 461 SNWSRPSSSKRSTTPGSAWSRGSTTPGSSWSQGAQTPGTP 500
>L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical
protein F42H10.7a protein.
Length = 529
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 335 ARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQP 454
+ W R +S R+T SR TP S+G TP P
Sbjct: 459 SNWSRPSSSKRSTTPGSAWSRGSTTPGSSWSQGAQTPGTP 498
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 421 WIERQMDAVT-AIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELER 558
W+ RQ D + IGM +Q S D LRR+ E +K + +ER
Sbjct: 1275 WLSRQFDELEDEIGMTIQTSRADDLRRMNSTEWN--KWKTDLANIER 1319
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 421 WIERQMDAVT-AIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELER 558
W+ RQ D + IGM +Q S D LRR+ E +K + +ER
Sbjct: 1275 WLSRQFDELEDEIGMTIQTSRADDLRRMNSTEWN--KWKTDLANIER 1319
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 366 EQREPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTQRIRSR 518
E RE E R + +RR R+ GR + R G R +R RSR
Sbjct: 141 ENREKEKQSRDKERRRSRSPRDRRGRATTSRSGRTSSSDRDRHSKRRSRSR 191
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +2
Query: 317 WCRSATARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSA 496
+C A+ RS + R R+ S +R S P RGR S R+ ++ S
Sbjct: 131 YCAYQRAKQVRSNSQRRRRRSDSQESSKRSA-SPPVRRGRSKSRSRSRSPSRSRSRSRSR 189
Query: 497 DSKNTKQASTRTNHISRNWNASTKPS 574
+K ++R +SR+ + S S
Sbjct: 190 SVSRSKSPASRNGRVSRHRSRSQNRS 215
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +2
Query: 317 WCRSATARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSA 496
+C A+ RS + R R+ S +R S P RGR S R+ ++ S
Sbjct: 131 YCAYQRAKQVRSNSQRRRRRSDSQESSKRSA-SPPVRRGRSKSRSRSRSPSRSRSRSRSR 189
Query: 497 DSKNTKQASTRTNHISRNWNASTKPS 574
+K ++R +SR+ + S S
Sbjct: 190 SVSRSKSPASRNGRVSRHRSRSQNRS 215
>Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical
protein D1086.10a protein.
Length = 177
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/83 (21%), Positives = 34/83 (40%)
Frame = +2
Query: 326 SATARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSK 505
SAT + A + T+ S+ P S+ +PS S+ ++ S+++
Sbjct: 13 SATPTLSFTTAPTGTSPTVDTSAVIAPNPESSPSQSTDSPSTASSTATEQIFTPSTSEPT 72
Query: 506 NTKQASTRTNHISRNWNASTKPS 574
+T + T + WN + PS
Sbjct: 73 STTTTAPGTTELPFEWNVTAPPS 95
>U21321-5|AAL11111.1| 553|Caenorhabditis elegans Hypothetical
protein ZK177.8b protein.
Length = 553
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 64 DGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLVHQV 213
+G+R DM I+ I++I + + F LGE D+EY V L+ ++
Sbjct: 119 NGSRFKHEDMSIL-IIKKIMNKPEIKSEFACILGETDEEYAKSVTLITEL 167
>U21321-4|AAG00049.1| 587|Caenorhabditis elegans Hypothetical
protein ZK177.8a protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 64 DGTREDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLVHQV 213
+G+R DM I+ I++I + + F LGE D+EY V L+ ++
Sbjct: 153 NGSRFKHEDMSIL-IIKKIMNKPEIKSEFACILGETDEEYAKSVTLITEL 201
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 208 QVEAIV-KQHQIPGGLENPYTTLTAHELNRKWSDVRQLVPQRDGTLAAELRKQQ 366
QVE I K HQI G L+N LTA + + +L+P L + LR Q
Sbjct: 266 QVEHIWNKYHQIIGYLKNEEDQLTAEHYGQFCRKIYRLLPIEQADLMSWLRPAQ 319
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
of males (increasedx chromosome loss) protein 1, isoform
a protein.
Length = 1281
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 388 QFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELE 555
Q ++A ++R++ + G + SL +LRR KE++ V A + + +E
Sbjct: 387 QLKDQAQRESAMVQRELLMAEQVFEGDKSSLNHELRRQKEHQERVKAKEGDVRRIE 442
>AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical
protein Y108G3AL.3 protein.
Length = 685
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 369 QREPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFG-RPAPQTQR----IRSRRLRVQ 533
Q EPE GEGK+R + A+ R++S+ G + G + +P ++ SR+
Sbjct: 432 QMEPEQD--GEGKKRPETSKGANERKYSNA-GLEDIVGPKSSPHEEKKSSHPSSRKGSKA 488
Query: 534 TTYRGTGTHPPSR 572
T T PPSR
Sbjct: 489 TDENAPATRPPSR 501
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Frame = -1
Query: 217 LRPGVPSLLS------PGTPCQLRREWP*TERARPSARISLRWCAL*TCRRDPRGFHPAS 56
+ P +P +S P L+ + P ER + +I W T + F +
Sbjct: 56 INPHIPMFISQNPWYVPSEGPTLKHQRPHEEREKKMTQIH-EWYQKGTTGKSATKFRKGA 114
Query: 55 CERCGAFG 32
CE CGA G
Sbjct: 115 CENCGAMG 122
>AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical
protein Y39E4B.7 protein.
Length = 472
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 121 ISLRWCAL*TCRRDPRGFHPASCERC 44
+ ++WC R PR H + C RC
Sbjct: 100 VRMKWCVTCKFYRPPRSSHCSVCNRC 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,875
Number of Sequences: 27780
Number of extensions: 273620
Number of successful extensions: 1000
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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