Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D22
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   0.43 
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   0.76 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   0.76 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    24   2.3  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   3.1  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    23   5.3  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    23   5.3  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    23   5.3  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    23   7.1  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    23   7.1  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    23   7.1  
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       23   7.1  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    22   9.3  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    22   9.3  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 118 PYRHENRSSMENIFLINWYI 177
           PYR +NR   E I +I+W+I
Sbjct: 40  PYRRKNRFGKEPIGIISWWI 59


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 39  NANCHIHRNIIFHRELAIYQII 104
           NA  ++H+N I HR+L I  ++
Sbjct: 161 NALVYLHKNFIVHRDLKIENVL 182


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 6   RIQCKLPTLFDNANCHIHRNIIFHRELAIYQIIYSS 113
           ++Q  +  +F   N HIH N  FHR++    I+ SS
Sbjct: 137 QVQDIMRQIFKGLN-HIHTNGFFHRDMKPENILISS 171


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 60  YVCGNLHCQKVLVICIVSSC 1
           YV  N HC     +C+ S C
Sbjct: 462 YVLSNCHCLSAFYLCMPSLC 481


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 39  NANCHIHRNIIFHRELAIYQIIYS 110
           +A  ++H+N + HR+L I  I+ S
Sbjct: 252 SALSYLHQNSVVHRDLKIENILIS 275


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 3   TRIQCKLPTLFDNANCHIHRNIIFHRELAIYQIIYSSITLSP*KSIKYGKYFF 161
           T ++   P +  N   H++ N I +   A+ +  Y  ++L+P  S  Y   F+
Sbjct: 403 TYLETMFPQIARNKTEHVYINHIGNAWFAMSERHYPLVSLAPEASFLYYNGFY 455


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 51  HIHRNIIFHRELAIYQIIYSS 113
           HIH   I HR+L    ++ SS
Sbjct: 123 HIHSRFILHRDLKPNNLLISS 143


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 52  WQFALSKSVGNLHCIL 5
           W F +  S   LHC+L
Sbjct: 138 WSFCIVSSFAGLHCLL 153


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 109 VQLPYRHENRSSMENIFLINW 171
           + LP +    SS  +IFL NW
Sbjct: 141 LNLPDKKSRPSSQSSIFLSNW 161


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 91  YIKLYIVQLPYRHENRS--SMENIFLINWYI 177
           ++ L I QL   ++N+S  S+ ++FLI W I
Sbjct: 29  WVVLLIPQLLENYKNQSGESISDLFLIIWLI 59


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 3   TRIQCKLPTLFDNANCHIHRNIIFHRELAIYQIIY 107
           T  Q K+P+L DN+N  I +   F RE+    I++
Sbjct: 359 TSAQQKMPSLGDNSNTIISK--YFIREITESNIVH 391


>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 64  ILFFTEN*QYIKLYIVQLPYRHENRSSMENIFLIN 168
           IL F  + +  +LYI  LPYR +     + I LIN
Sbjct: 34  ILRFEWSEEMYRLYIWLLPYRKDYNEKFKGI-LIN 67


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 81  LCEK*YFYVCGNLHCQK 31
           +C+K   ++ G++HC+K
Sbjct: 144 MCDKLLNFINGHIHCRK 160


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 57  HRNIIFHRELAIYQI 101
           +RN IFHR +A + I
Sbjct: 312 YRNTIFHRNIARFMI 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,686
Number of Sequences: 5004
Number of extensions: 13082
Number of successful extensions: 39
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)