Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D22
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0778 + 7111562-7112152,7113034-7113157,7113252-7113395,711...    26   4.9  
08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119     25   6.5  
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568     25   8.6  
02_05_0236 + 27091767-27092360                                         25   8.6  

>12_01_0778 +
           7111562-7112152,7113034-7113157,7113252-7113395,
           7113485-7113630,7113716-7113838,7113922-7114089,
           7114253-7114474,7114572-7114745
          Length = 563

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 51  HIHRNIIFHRELAIYQIIYSSIT-LSP*KSIKYG 149
           H H+N + HR+L     +Y++ +  SP K I +G
Sbjct: 198 HCHKNGVMHRDLKPENFLYANASENSPLKVIDFG 231


>08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119
          Length = 617

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 172 TNLLKKYFPYLIDFHGD-KVIELYII 98
           TN++  Y  YLI  HGD   + +Y++
Sbjct: 187 TNIILGYSSYLIQIHGDANFLNIYMV 212


>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
          Length = 605

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 3   TRIQCKLPTLFDNANCHIHRNIIF 74
           T+++C+LP +  +  C  H   IF
Sbjct: 527 TKVKCELPPMHHDGECPDHMTTIF 550


>02_05_0236 + 27091767-27092360
          Length = 197

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 24  PTLFDNANCHIH 59
           P+ FD  NCH+H
Sbjct: 185 PSSFDRVNCHVH 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,302,487
Number of Sequences: 37544
Number of extensions: 58902
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)