Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D22
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U80840-4|AAB37931.1|  340|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    25   9.4  

>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 18  KLPTLFDNANCHIHRNI-IFHRELAIY 95
           KLP  FDN+  ++H N+  F+  L+ Y
Sbjct: 422 KLPPTFDNSTIYLHTNVSTFNLSLSTY 448


>U80840-4|AAB37931.1|  340|Caenorhabditis elegans Hypothetical
           protein F08D12.9 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 30  LFDNANCHIHRNIIFHRELAIYQIIYSSITLS 125
           L +N    IH ++ F  E+ + +++YS IT++
Sbjct: 200 LSENQTNMIHHSMPFMAEMGVDRVLYSCITVN 231


>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 93  ILLILCEK*YFYVCGNLHCQKVL 25
           I+++L  K Y  VC N+ C K+L
Sbjct: 288 IIMLLIHKPYREVCVNMFCFKIL 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,241,423
Number of Sequences: 27780
Number of extensions: 67991
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)