Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D22
         (179 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   1.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   1.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   2.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   2.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   5.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    19   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    18   9.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    18   9.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    18   9.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 24  PTLFDNANCHIHRNIIFHREL 86
           P L   +N H+   ++ HRE+
Sbjct: 656 PLLLVLSNIHVKEVLVHHREM 676


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 24  PTLFDNANCHIHRNIIFHREL 86
           P L   +N H+   ++ HRE+
Sbjct: 656 PLLLVLSNIHVKEVLVHHREM 676


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 91  YIKLYIVQLPYRHENRSSMENIFLINW 171
           Y+ ++I  +P  + N   ++NI  I W
Sbjct: 67  YVLIHIGSVPVNNINLILLQNIIDICW 93



 Score = 19.0 bits (37), Expect = 5.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 104 YNLIYC*FSVKNNISMYVAICIVKKCW*FALY 9
           Y LI+      NNI++ +   I+  CW   +Y
Sbjct: 67  YVLIHIGSVPVNNINLILLQNIIDICWITMVY 98


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 51  HIHRNIIFHRELAIYQIIYSS 113
           H H N + HR+L    ++ +S
Sbjct: 24  HCHHNGVVHRDLKPENLLLAS 44


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 81  ELAIYQIIYSSITLSP*KSIKY 146
           E+A     +SS+TL   K++KY
Sbjct: 85  EIAALNHKFSSVTLYRNKTVKY 106


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 69  IFHRELAIYQI 101
           +FH+E+A+Y +
Sbjct: 401 VFHQEMALYYL 411



 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 87   LILCEK*YFYVCGN 46
            +++ E  +FYVCG+
Sbjct: 1061 MLVYEGGHFYVCGD 1074


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 24  PTLFDNANCHIHRNI 68
           PTLF N      RNI
Sbjct: 357 PTLFSNVTPKFPRNI 371


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 42 HCQKVLVIC 16
          HC+KV  IC
Sbjct: 73 HCEKVGCIC 81


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 27  LVICIVSSC 1
           L++C V+SC
Sbjct: 316 LIVCTVNSC 324


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 27  LVICIVSSC 1
           L++C V+SC
Sbjct: 369 LIVCTVNSC 377


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 83  ISNISNY 103
           ISNISNY
Sbjct: 90  ISNISNY 96


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 83  ISNISNY 103
           ISNISNY
Sbjct: 90  ISNISNY 96


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/20 (25%), Positives = 11/20 (55%)
 Frame = -3

Query: 63  FYVCGNLHCQKVLVICIVSS 4
           ++  GN H  ++  +C+  S
Sbjct: 726 YFGTGNAHETQITTLCVAIS 745


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 83  ISNISNY 103
           ISNISNY
Sbjct: 328 ISNISNY 334


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/20 (25%), Positives = 11/20 (55%)
 Frame = -3

Query: 63  FYVCGNLHCQKVLVICIVSS 4
           ++  GN H  ++  +C+  S
Sbjct: 816 YFGTGNAHETQITTLCVAIS 835


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,723
Number of Sequences: 438
Number of extensions: 868
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)