Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D21
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...   103   6e-23
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    97   9e-21
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    28   3.5  
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445...    28   4.7  
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    28   4.7  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    27   6.2  
08_01_0680 - 5958066-5960253,5960707-5961503                           27   8.2  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score =  103 bits (248), Expect = 6e-23
 Identities = 55/135 (40%), Positives = 78/135 (57%)
 Frame = +3

Query: 18  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 197
           MPF R+VE GRVALV+ G   G+LV +VD++DQ RAL+D P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58

Query: 198 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 377
           ++          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 378 RARTAVFKSLKVKAA 422
            A       LK  AA
Sbjct: 119 GAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 96.7 bits (230), Expect = 9e-21
 Identities = 48/117 (41%), Positives = 71/117 (60%)
 Frame = +3

Query: 21  PFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFR 200
           PF R+VE GRVALV+ G   G+LV +VD++DQ RAL+D P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIK 72

Query: 201 LKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVK 371
           +          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 427 ARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLAHF 269
           A A+F  K+ N  ++A  +    D  L     ++  L S+  NFC+   LA+F
Sbjct: 124 AAASFRVKVNNMLMIAHDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYF 176


>12_01_0551 +
           4446937-4447353,4449141-4450013,4451206-4451244,
           4452339-4452581
          Length = 523

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 250 VHAFLTTRVGAVKGYFRRNFVKWSWLRR 167
           +H   T+R+G  + +FR   V + WLRR
Sbjct: 351 LHCTSTSRLGIFEAWFRPLLVDFGWLRR 378


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 451 ILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICAL 317
           IL L  TP   A  FK+L    + R  L     ++NL  S++C +
Sbjct: 338 ILTLTDTP-NVAVAFKILMNVNMERITLAMEIATINLEVSIVCVM 381


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 42   PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS 146
            P  VA  +DG L   ++G V  ID    L D PG+
Sbjct: 1159 PSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGA 1193


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 454  GILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLA 275
            G L+   +  R +FT   ++   L   +L        L  SV+  LF L+A    +W L 
Sbjct: 930  GSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCISVLSLLFWLYAYLAEYWKLF 989

Query: 274  HF 269
            HF
Sbjct: 990  HF 991


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,753
Number of Sequences: 37544
Number of extensions: 241756
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)