Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D21
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 104 4e-23
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 39 0.002
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 39 0.002
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 31 0.34
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 31 0.34
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 31 0.34
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 31 0.34
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 31 0.34
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 31 0.34
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 31 0.60
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 30 0.79
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr... 28 3.2
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 28 4.2
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 28 4.2
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 27 5.6
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 104 bits (249), Expect = 4e-23
Identities = 54/131 (41%), Positives = 78/131 (59%)
Frame = +3
Query: 18 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 197
M F R V+ GRV ++ G +GKL +V++ID R IDGP S V+R L L LTKF
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 198 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 377
LK T+ V+ A+ A++ E + K+QWA+K+A + RA++TD++R+KL A+ RN
Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120
Query: 378 RARTAVFKSLK 410
R LK
Sbjct: 121 RIVRVELAKLK 131
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/79 (36%), Positives = 38/79 (48%)
Frame = +3
Query: 255 AQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGV 434
A EK AK AQK A EK+A+ T + K T+ +VK+ ++ + K K A
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVA---- 182
Query: 435 FGKSKIPKSAVKKLRTKKP 491
KS KSA KK KP
Sbjct: 183 --KSPAKKSAPKKAAAAKP 199
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/79 (36%), Positives = 38/79 (48%)
Frame = +3
Query: 255 AQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGV 434
A EK AK AQK A EK+A+ T + K T+ +VK+ ++ + K K A
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVA---- 182
Query: 435 FGKSKIPKSAVKKLRTKKP 491
KS KSA KK KP
Sbjct: 183 --KSPAKKSAPKKAAAAKP 199
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 138 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 314
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 315 KRAQMTDYD 341
+ + D
Sbjct: 89 SKFNLFGSD 97
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 138 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 314
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 73 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 129
Query: 315 KRAQMTDYD 341
+ + D
Sbjct: 130 SKFNLFGSD 138
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 138 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 314
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 102 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 158
Query: 315 KRAQMTDYD 341
+ + D
Sbjct: 159 SKFNLFGSD 167
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 138 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 314
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 315 KRAQMTDYD 341
+ + D
Sbjct: 89 SKFNLFGSD 97
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 138 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 314
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 315 KRAQMTDYD 341
+ + D
Sbjct: 89 SKFNLFGSD 97
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 138 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 314
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 102 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 158
Query: 315 KRAQMTDYD 341
+ + D
Sbjct: 159 SKFNLFGSD 167
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 30.7 bits (66), Expect = 0.60
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 279 KSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAAR 425
++QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -2
Query: 139 GPSISARV*---SMISTTPTNFPFRGPSETRATRPGS 38
GPS S+ V SMI+TTP PF P+ + PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 264 NEKWAKSQWAQKLANKEKRAQMTDYDRFK 350
N KW + A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
protein ZK455.2 protein.
Length = 1118
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 188 NKIP-PKIPFYSTHTCCQKSVDRR 256
N+ P P P+YST T C K+V RR
Sbjct: 53 NRSPSPHEPYYSTRTRCSKNVRRR 76
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 111 DQTRALI-DGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQ 287
DQ A++ +G G + R ++ +K +LK TAP V + WT + A S
Sbjct: 1033 DQAAAMMNEGKGQKIKNMLRRNSRRDKSKSKLKIESTAPAAVNPRGWTQPTPSNTSAASV 1092
Query: 288 WAQKLANKEKR 320
+ N ++R
Sbjct: 1093 ESAFCGNYQER 1103
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical protein
C04D8.1 protein.
Length = 1317
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 111 DQTRALI-DGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQ 287
DQ A++ +G G + R ++ +K +LK TAP V + WT + A S
Sbjct: 911 DQAAAMMNEGKGQKIKNMLRRNSRRDKSKSKLKIESTAPAAVNPRGWTQPTPSNTSAASV 970
Query: 288 WAQKLANKEKR 320
+ N ++R
Sbjct: 971 ESAFCGNYQER 981
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 27.5 bits (58), Expect = 5.6
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = -2
Query: 331 VICALFSLFANFCAHWLLAHFSFS*ASVHAFLTTRVGAVKGYFRRNFVKWSWLRRICCRE 152
+I + S F +H L AH + + V A + G VK Y + + + + R +CC
Sbjct: 318 IIGWVLSKFLTRVSH-LQAHLNLAYDKV-AEMRAEAGKVKNYTIQAMI-YRYYRYLCCAA 374
Query: 151 TPLPGPSISARV*SMISTTPTNFPFRG 71
GP++ A + +++ T N + G
Sbjct: 375 LQYFGPAVLALLFALLLKTTGNLSWIG 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,769,357
Number of Sequences: 27780
Number of extensions: 208401
Number of successful extensions: 608
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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