Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D20
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    23   5.5  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    23   7.3  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    23   7.3  

>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 39  NIIVKENNLISHK 77
           NI+VK+N+  SHK
Sbjct: 123 NILVKDNHFFSHK 135


>SPBC19G7.06 |mbx1||MADS-box transcription factor
          Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 12 HEVSVVCDFNIIV 50
          HE+SV+CD  ++V
Sbjct: 43 HELSVLCDAKVVV 55


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 82  NYLCDIKLFSLTMMLKSQTTDTSCRIF 2
           +Y+C ++L    +   + T  ++CRIF
Sbjct: 69  DYMCFVQLIHSNLGSWTTTAQSTCRIF 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,830
Number of Sequences: 5004
Number of extensions: 5654
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)