Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D19
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265...    76   1e-14
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571...    65   3e-11
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235...    65   3e-11
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704...    64   7e-11
06_01_0303 + 2194345-2194414,2195228-2195328,2195818-2196657,219...    29   2.3  
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205...    29   2.3  
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204...    29   2.3  

>01_06_1419 +
           37225007-37225011,37225633-37225852,37226347-37226516,
           37226615-37226676,37227002-37227207,37227581-37227634
          Length = 238

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = +1

Query: 190 VRLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXX 369
           V+L +IPRPKM+VC+LGD QH +EA+++ +  M                           
Sbjct: 52  VKLPHIPRPKMKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLA 111

Query: 370 SESLIKQIPRLLGPGLNKAGK 432
           SE++IKQIPRLLGPGLNKAGK
Sbjct: 112 SEAIIKQIPRLLGPGLNKAGK 132


>08_02_1573 +
           27956351-27956409,27956411-27956630,27957000-27957150,
           27957602-27957807,27957967-27958020
          Length = 229

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 35/86 (40%), Positives = 47/86 (54%)
 Frame = +1

Query: 190 VRLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXX 369
           V+L +IPRPKM+VC+LGD QH +EA+++ +  M                           
Sbjct: 70  VKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLA 129

Query: 370 SESLIKQIPRLLGPGLNKAGKFPGLL 447
           SE++IKQIPRLLGP     GKFP L+
Sbjct: 130 SEAIIKQIPRLLGP-----GKFPTLV 150


>08_02_1568 +
           27922338-27922342,27922839-27923058,27923369-27923519,
           27923874-27924079,27924211-27924264
          Length = 211

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 35/86 (40%), Positives = 47/86 (54%)
 Frame = +1

Query: 190 VRLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXX 369
           V+L +IPRPKM+VC+LGD QH +EA+++ +  M                           
Sbjct: 52  VKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLA 111

Query: 370 SESLIKQIPRLLGPGLNKAGKFPGLL 447
           SE++IKQIPRLLGP     GKFP L+
Sbjct: 112 SEAIIKQIPRLLGP-----GKFPTLV 132


>02_02_0678 +
           12868735-12868739,12869576-12869795,12870280-12870430,
           12870853-12871058,12871166-12871219
          Length = 211

 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 34/86 (39%), Positives = 47/86 (54%)
 Frame = +1

Query: 190 VRLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXX 369
           V+L +IPRPK++VC+LGD QH +EA+++ +  M                           
Sbjct: 52  VKLPHIPRPKLKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLA 111

Query: 370 SESLIKQIPRLLGPGLNKAGKFPGLL 447
           SE++IKQIPRLLGP     GKFP L+
Sbjct: 112 SEAIIKQIPRLLGP-----GKFPTLV 132


>06_01_0303 +
           2194345-2194414,2195228-2195328,2195818-2196657,
           2196743-2196889,2196985-2197365
          Length = 512

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 46  FLDRFMMMFICMYYLSILMKNFLTEYDYLKL 138
           F  +    F+C+ +LSI +  +   YDYL L
Sbjct: 340 FAPKLCSKFLCLRHLSIALIGYFPAYDYLSL 370


>06_01_0280 -
           2056449-2056487,2056613-2056930,2057025-2057171,
           2057273-2058112,2059044-2059117,2059515-2059647,
           2059804-2059941
          Length = 562

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 46  FLDRFMMMFICMYYLSILMKNFLTEYDYLKL 138
           F  +    F+C+ +LSI +  F   YDYL L
Sbjct: 398 FAPKLCSKFLCLRHLSIGLIGFFPAYDYLSL 428


>06_01_0278 -
           2042574-2042612,2042738-2043055,2043150-2043296,
           2043382-2044221,2045182-2045282,2045666-2045791,
           2047124-2047214
          Length = 553

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 46  FLDRFMMMFICMYYLSILMKNFLTEYDYLKL 138
           F  +    F+C+ +LSI +  F   YDYL L
Sbjct: 389 FAPKLCSKFLCLRHLSIGLIGFFPAYDYLSL 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,881,603
Number of Sequences: 37544
Number of extensions: 139131
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)