Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D19
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    90   8e-19
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    90   8e-19
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    73   1e-13
AC084154-6|AAO91684.1|  319|Caenorhabditis elegans Serpentine re...    32   0.17 

>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 89.8 bits (213), Expect = 8e-19
 Identities = 42/86 (48%), Positives = 50/86 (58%)
 Frame = +1

Query: 190 VRLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXX 369
           +RLK+IPRP M+VC+ GDQ H DEA   D+P M                           
Sbjct: 22  IRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIA 81

Query: 370 SESLIKQIPRLLGPGLNKAGKFPGLL 447
           SESLIKQIPR+LGPGLNKAGKFP ++
Sbjct: 82  SESLIKQIPRILGPGLNKAGKFPSVV 107


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 89.8 bits (213), Expect = 8e-19
 Identities = 42/86 (48%), Positives = 50/86 (58%)
 Frame = +1

Query: 190 VRLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXX 369
           +RLK+IPRP M+VC+ GDQ H DEA   D+P M                           
Sbjct: 52  IRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIA 111

Query: 370 SESLIKQIPRLLGPGLNKAGKFPGLL 447
           SESLIKQIPR+LGPGLNKAGKFP ++
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVV 137


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 35/76 (46%), Positives = 41/76 (53%)
 Frame = +1

Query: 220 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 399
           M+VC+ GDQ H DEA   D+P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 400 LLGPGLNKAGKFPGLL 447
           +LGPGLNKAGKFP ++
Sbjct: 61  ILGPGLNKAGKFPSVV 76


>AC084154-6|AAO91684.1|  319|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 64 protein.
          Length = 319

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 79  MYYLSILMKNFLTEYDYLKLREKQKVHFFHYL*DVYFVRLKYIPRP 216
           +YY +I +K+F    D   ++ +  + F+HYL  + ++ +K+IP P
Sbjct: 111 LYYRTICLKSF----DPKMIKRRNLLFFWHYLVPLVYLAIKFIPSP 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,018,906
Number of Sequences: 27780
Number of extensions: 138407
Number of successful extensions: 255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)